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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:203.1 nTPM
HPA:203.1 nTPM
GTEx:111.7 nTPM
FANTOM5:375.7 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 203.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 187.0
2194 Female, age 79, both hemispheres 196.7
1981 Female, age 72, midline 190.2
2816 Male, age 47, midline 184.1
2565 Male, age 75, midline 184.0
2048 Male, age 55, midline 180.1
Cervical spinal cord, dorsal horn
nTPM: 203.1
2297 Male, age 75, both hemispheres 228.2
2721 Male, age 90, both hemispheres 217.8
2069 Male, age 47, both hemispheres 211.5
1877 Male, age 55, unknown 197.5
2173 Female, age 72, unknown 191.9
2296 Male, age 66, both hemispheres 171.8
Cervical spinal cord, ventral horn
nTPM: 180.4
2068 Male, age 55, unknown 198.2
2480 Male, age 75, both hemispheres 191.7
2820 Female, age 79, both hemispheres 186.0
2295 Male, age 66, both hemispheres 176.4
2809 Male, age 90, both hemispheres 169.9
2098 Female, age 72, unknown 159.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 111.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 111.7
Samples: 159

Max nTPM: 378.0
Min nTPM: 26.2
Std nTPM: 63.6
Median nTPM: 93.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 378.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 324.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 292.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 283.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 278.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 272.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 247.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 232.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 232.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 229.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 220.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 216.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 214.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 213.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 211.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 211.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 206.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 203.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 202.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 192.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 189.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 188.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 186.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 185.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 178.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 174.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 162.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 160.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 159.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 158.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 157.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 153.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 152.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 150.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 148.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 147.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 143.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 139.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 138.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 137.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 136.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 136.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 136.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 134.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 133.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 131.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 131.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 130.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 128.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 127.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 127.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 124.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 124.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 120.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 118.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 117.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 116.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 116.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 115.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 114.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 112.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 112.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 110.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 109.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 109.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 107.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 107.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 106.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 105.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 104.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 103.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 100.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 100.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 100.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 100.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 99.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 99.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 95.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 95.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 93.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 92.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 91.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 90.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 90.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 89.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 88.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 87.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 86.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 86.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 85.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 84.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 84.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 83.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 81.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 80.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 80.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 78.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 77.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 75.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 75.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 74.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 73.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 73.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 73.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 73.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 72.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 71.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 70.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 70.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 70.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 69.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 69.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 69.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 68.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 68.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 65.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 64.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 64.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 63.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 63.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 61.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 60.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 60.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 60.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 60.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 59.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 59.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 58.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 58.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 57.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 57.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 57.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 56.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 56.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 56.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 55.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 55.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 55.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 55.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 54.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 54.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 54.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 51.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 51.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 50.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 50.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 48.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 48.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 48.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 47.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 47.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 46.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 40.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 40.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 40.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 39.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 37.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 36.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 26.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 375.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 375.7
FF:10181-103D1 60 years, female 615.5
FF:10159-103A6 76 years, female 135.9

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