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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Not detected
Photoreceptor cells: High
Pigment epithelial cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:385.0 nTPM
GTEx:385.0 nTPM
FANTOM5:137.2 Scaled Tags Per Million
Pig:134.5 nTPM
Mouse:1886.7 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA054148
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA059929
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Medium
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 385.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 385.0
Samples: 105

Max nTPM: 853.3
Min nTPM: 131.8
Std nTPM: 125.8
Median nTPM:
218_1 71 years, female 853.3
322_1 76 years, male 701.2
447_1 81 years, male 617.2
350_1 84 years, female 592.3
316_1 62 years, male 589.7
237_1 82 years, male 586.5
319_1 81 years, male 560.1
379_1 60 years, male 553.9
321_1 62 years, female 553.1
377_1 82 years, female 550.5
6_1 73 years, female 546.3
335_1 73 years, female 546.0
376_1 75 years, female 533.2
163_1 78 years, male 530.0
354_1 81 years, female 518.7
352_1 62 years, male 516.2
452_1 88 years, female 511.5
172_1 72 years, female 504.8
349_1 83 years, male 500.6
2_1 77 years, female 493.3
375_1 74 years, female 491.8
295_1 61 years, female 487.4
286_1 68 years, female 474.9
348_1 84 years, male 470.8
293_1 68 years, female 469.4
405_1 91 years, male 468.7
480_1 63 years, male 467.4
503_1 68 years, male 464.1
307_1 66 years, female 458.4
243_1 75 years, male 456.0
318_1 68 years, male 453.2
355_1 70 years, female 444.9
351_1 91 years, male 443.2
189_1 76 years, male 434.7
425_1 59 years, female 434.2
386_1 76 years, male 432.6
404_1 82 years, female 431.3
394_1 75 years, female 429.8
153_1 70 years, female 429.4
356_1 87 years, female 428.0
229_1 69 years, female 427.9
495_1 57 years, female 425.8
389_1 86 years, female 422.5
406_1 79 years, male 416.6
353_1 82 years, female 401.9
320_1 89 years, female 399.8
292_1 71 years, male 386.3
251_1 78 years, male 385.6
173_1 67 years, male 382.9
142_1 61 years, female 382.5
384_1 83 years, male 379.2
265_1 87 years, male 378.7
145_1 84 years, male 374.5
499_1 55 years, female 371.1
126_1 63 years, male 370.9
526_1 61 years, male 368.7
43_1 64 years, female 367.6
266_1 85 years, male 367.0
177_1 74 years, male 366.2
246_1 77 years, male 365.2
264_1 73 years, female 357.5
291_1 76 years, male 355.8
217_1 76 years, male 352.2
518_1 75 years, female 350.2
4_1 88 years, female 348.8
517_1 88 years, male 344.9
324_1 76 years, male 341.7
35_1 74 years, female 338.5
396_1 62 years, male 331.3
468_1 89 years, male 329.8
317_1 60 years, male 329.5
115_1 83 years, male 327.6
347_1 72 years, male 324.3
506_1 65 years, male 314.9
162_1 79 years, female 314.2
81_1 67 years, male 306.3
137_1 83 years, male 304.8
9_1 66 years, female 304.5
466_1 57 years, female 298.6
311_1 78 years, male 295.5
254_1 77 years, female 289.1
17_1 71 years, male 280.5
18_1 88 years, male 278.1
288_1 66 years, female 277.8
313_1 79 years, female 277.7
117_1 61 years, male 275.2
314_1 67 years, male 271.9
308_1 70 years, female 266.9
32_1 67 years, male 263.8
41_1 94 years, female 251.3
42_1 85 years, male 247.9
120_1 70 years, female 246.1
109_1 81 years, female 243.2
139_1 64 years, female 239.5
415_1 77 years, female 229.9
99_1 64 years, male 226.3
315_1 62 years, female 202.2
414_1 84 years, female 195.8
149_1 88 years, male 192.3
119_1 70 years, female 175.7
501_1 88 years, male 171.6
490_1 67 years, female 164.9
89_1 63 years, male 142.7
413_1 59 years, female 137.9
491_1 89 years, female 131.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 137.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 137.2
FF:10030-101E3 24-65 years, mixed 137.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 134.5
Pig sample Sample description nTPM
Retina
nTPM: 134.5
Samples: 4

Max nTPM: 163.4
Min nTPM: 115.0
Sample A Female 136.1
Sample B Female 115.0
Sample C Male 163.4
Sample D Male 123.3

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1886.7
Mouse sample Sample description nTPM
Retina
nTPM: 1886.7
Samples: 4

Max nTPM: 1939.5
Min nTPM: 1779.8
Sample A Male 1939.5
Sample B Male 1918.6
Sample C Female 1779.8
Sample D Female 1908.9

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by the Knut & Alice Wallenberg Foundation.