MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:41.8 nTPM
HPA:41.8 nTPM
GTEx:42.0 nTPM
FANTOM5:23.7 Scaled Tags Per Million
Pig:27.8 nTPM
Mouse:43.4 nTPM
Allen mouse:5.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.1
2586 Male, age 75, left hemisphere 44.5
2019 Male, age 18, unknown 42.5
1827 Male, age 72, unknown 39.3
2828 Female, age 72, unknown 37.7
2411 Female, age 72, unknown 36.9
2666 Male, age 74, left hemisphere 35.7
1870 Female, age 42, unknown 33.9
1833 Male, age 53, unknown 33.4
2219 Male, age 76, both hemispheres 33.4
1830 Male, age 51, unknown 33.3
Dorsal raphe nucleus
nTPM: 39.4
2298 Female, age 72, unknown 45.1
1828 Male, age 53, unknown 40.2
2047 Male, age 72, unknown 38.6
2016 Female, age 72, unknown 37.7
2750 Male, age 76, both hemispheres 35.5
Inferior colliculus
nTPM: 35.0
2097 Female, age 72, unknown 38.3
1890 Male, age 53, unknown 35.6
2849 Male, age 72, unknown 33.3
1848 Female, age 42, unknown 33.0
Median raphe nucleus
nTPM: 36.2
2220 Male, age 76, midline 36.2
Pedunculopontine tegmental nucleus
nTPM: 34.1
1921 Female, age 85, both hemispheres 36.6
2334 Male, age 80, both hemispheres 35.3
2338 Male, age 61, both hemispheres 30.4
Periaquaductal grey, anterior
nTPM: 40.5
1795 Male, age 51, unknown 44.2
2502 Female, age 75, unknown 39.3
1947 Male, age 18, unknown 38.0
Periaquaductal grey, dorsal
nTPM: 36.0
2850 Male, age 76, both hemispheres 39.5
1840 Male, age 53, unknown 36.3
1831 Male, age 72, unknown 34.3
2464 Female, age 72, unknown 34.0
Periaquaductal grey, lateral
nTPM: 41.8
2272 Male, age 74, both hemispheres 52.9
2140 Male, age 76, both hemispheres 38.2
2053 Male, age 18, unknown 34.3
Pretectal area
nTPM: 38.7
2273 Male, age 74, both hemispheres 44.7
2007 Male, age 72, unknown 43.7
1816 Male, age 51, unknown 41.3
1817 Female, age 42, unknown 41.0
1944 Female, age 72, unknown 39.6
2667 Female, age 75, unknown 38.5
2224 Female, age 72, unknown 38.1
1815 Male, age 53, unknown 37.5
2407 Male, age 75, both hemispheres 36.0
2825 Male, age 18, unknown 34.8
2316 Male, age 76, right hemisphere 30.8
Red nucleus
nTPM: 35.7
2785 Male, age 18, unknown 43.1
2769 Male, age 72, unknown 36.9
2725 Female, age 75, unknown 36.6
2584 Male, age 75, left hemisphere 36.2
2588 Male, age 74, left hemisphere 35.6
2227 Male, age 72, unknown 35.4
1904 Male, age 53, unknown 34.6
1954 Female, age 42, unknown 34.5
2503 Female, age 72, unknown 34.4
1821 Female, age 72, unknown 34.1
1865 Male, age 51, unknown 33.8
2823 Male, age 76, right hemisphere 33.3
Substantia nigra
nTPM: 35.7
1916 Female, age 42, unknown 39.7
1889 Female, age 72, unknown 38.1
2583 Male, age 75, right hemisphere 38.1
1851 Male, age 51, unknown 37.3
1941 Male, age 53, unknown 36.9
2590 Female, age 75, unknown 34.6
2665 Male, age 74, both hemispheres 34.2
2409 Female, age 72, unknown 32.9
2699 Male, age 18, unknown 32.8
2241 Male, age 72, unknown 32.1
Superior colliculus
nTPM: 36.6
1796 Male, age 53, unknown 40.6
2261 Male, age 18, unknown 39.9
2087 Female, age 72, unknown 38.3
2664 Male, age 75, both hemispheres 37.6
2668 Female, age 75, unknown 37.2
1995 Male, age 72, unknown 36.6
2587 Male, age 74, left hemisphere 35.9
1839 Male, age 51, unknown 34.4
1913 Female, age 42, unknown 33.8
1895 Male, age 76, right hemisphere 32.0
Ventral tegmental area
nTPM: 36.1
1915 Female, age 42, unknown 38.4
2410 Female, age 72, unknown 37.3
1942 Male, age 51, unknown 36.6
2218 Male, age 76, both hemispheres 35.3
2021 Male, age 53, unknown 34.4
2223 Female, age 72, unknown 34.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.0
Samples: 139

Max nTPM: 67.7
Min nTPM: 21.1
Std nTPM: 9.6
Median nTPM: 41.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 67.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 66.6
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 65.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 64.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 61.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 60.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 60.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 60.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 59.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 59.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 58.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.7
FF:10158-103A5 76 years, female 23.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.8
Pig sample Sample description nTPM
Midbrain
nTPM: 25.1
Samples: 4

Max nTPM: 31.9
Min nTPM: 21.0
Sample A Female 21.0
Sample B Female 21.3
Sample C Male 31.9
Sample D Male 26.0
Periaqueductal gray
nTPM: 20.7
Samples: 3

Max nTPM: 22.9
Min nTPM: 18.0
Sample B Female 21.1
Sample C Male 22.9
Sample D Male 18.0
Substantia nigra
nTPM: 22.2
Samples: 4

Max nTPM: 28.9
Min nTPM: 17.6
Sample A Female 28.9
Sample B Female 17.6
Sample C Male 24.5
Sample D Male 17.6
Superior colliculi
nTPM: 27.8
Samples: 4

Max nTPM: 35.4
Min nTPM: 20.6
Sample A Female 29.7
Sample B Female 20.6
Sample C Male 35.4
Sample D Male 25.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.4
Samples: 4

Max nTPM: 53.3
Min nTPM: 34.3
Sample A Male 53.3
Sample B Male 40.7
Sample C Female 34.3
Sample D Female 45.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.9
75774674 Antisense, RP_060530_01_C11, Mouse strain C57BL/6J (56 days, male) 6.4
564782 Antisense, RP_040826_01_F09, Mouse strain C57BL/6J (56 days, male) 5.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.