MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:19.2 nTPM
HPA:19.2 nTPM
GTEx:32.7 nTPM
FANTOM5:43.2 Scaled Tags Per Million
Pig:24.6 nTPM
Mouse:46.9 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.7
2586 Male, age 75, left hemisphere 26.2
2666 Male, age 74, left hemisphere 21.5
2828 Female, age 72, unknown 19.6
2219 Male, age 76, both hemispheres 17.7
1827 Male, age 72, unknown 16.9
1870 Female, age 42, unknown 13.6
2411 Female, age 72, unknown 13.1
2019 Male, age 18, unknown 13.0
1833 Male, age 53, unknown 12.8
1830 Male, age 51, unknown 12.5
Dorsal raphe nucleus
nTPM: 13.7
2047 Male, age 72, unknown 15.6
2298 Female, age 72, unknown 14.3
2750 Male, age 76, both hemispheres 14.2
1828 Male, age 53, unknown 13.3
2016 Female, age 72, unknown 10.9
Inferior colliculus
nTPM: 11.9
1890 Male, age 53, unknown 12.8
2097 Female, age 72, unknown 12.8
2849 Male, age 72, unknown 11.5
1848 Female, age 42, unknown 10.6
Median raphe nucleus
nTPM: 15.6
2220 Male, age 76, midline 15.6
Pedunculopontine tegmental nucleus
nTPM: 13.7
1921 Female, age 85, both hemispheres 15.5
2334 Male, age 80, both hemispheres 13.1
2338 Male, age 61, both hemispheres 12.4
Periaquaductal grey, anterior
nTPM: 19.2
1795 Male, age 51, unknown 20.3
1947 Male, age 18, unknown 19.8
2502 Female, age 75, unknown 17.5
Periaquaductal grey, dorsal
nTPM: 13.6
2850 Male, age 76, both hemispheres 15.9
1831 Male, age 72, unknown 14.0
1840 Male, age 53, unknown 12.4
2464 Female, age 72, unknown 12.1
Periaquaductal grey, lateral
nTPM: 13.5
2140 Male, age 76, both hemispheres 14.9
2053 Male, age 18, unknown 13.3
2272 Male, age 74, both hemispheres 12.4
Pretectal area
nTPM: 16.3
1816 Male, age 51, unknown 20.7
1944 Female, age 72, unknown 19.0
2007 Male, age 72, unknown 18.8
1817 Female, age 42, unknown 17.9
2407 Male, age 75, both hemispheres 17.3
1815 Male, age 53, unknown 17.0
2667 Female, age 75, unknown 15.9
2825 Male, age 18, unknown 14.9
2316 Male, age 76, right hemisphere 14.7
2224 Female, age 72, unknown 11.9
2273 Male, age 74, both hemispheres 11.6
Red nucleus
nTPM: 13.2
2584 Male, age 75, left hemisphere 20.7
2588 Male, age 74, left hemisphere 15.3
2785 Male, age 18, unknown 14.3
1904 Male, age 53, unknown 14.0
2769 Male, age 72, unknown 13.8
2227 Male, age 72, unknown 12.8
2823 Male, age 76, right hemisphere 12.8
2725 Female, age 75, unknown 12.5
1865 Male, age 51, unknown 12.1
2503 Female, age 72, unknown 11.2
1954 Female, age 42, unknown 9.9
1821 Female, age 72, unknown 9.3
Substantia nigra
nTPM: 16.8
2665 Male, age 74, both hemispheres 27.9
1916 Female, age 42, unknown 20.7
1851 Male, age 51, unknown 19.1
2583 Male, age 75, right hemisphere 18.3
1941 Male, age 53, unknown 18.0
2699 Male, age 18, unknown 16.2
1889 Female, age 72, unknown 15.4
2590 Female, age 75, unknown 14.7
2241 Male, age 72, unknown 12.9
2409 Female, age 72, unknown 4.4
Superior colliculus
nTPM: 17.1
2664 Male, age 75, both hemispheres 24.6
2668 Female, age 75, unknown 21.1
2261 Male, age 18, unknown 20.1
1796 Male, age 53, unknown 18.5
2087 Female, age 72, unknown 18.1
1913 Female, age 42, unknown 15.8
1995 Male, age 72, unknown 14.5
2587 Male, age 74, left hemisphere 12.9
1839 Male, age 51, unknown 12.6
1895 Male, age 76, right hemisphere 12.6
Ventral tegmental area
nTPM: 14.7
1942 Male, age 51, unknown 16.4
1915 Female, age 42, unknown 15.7
2410 Female, age 72, unknown 15.7
2218 Male, age 76, both hemispheres 14.3
2021 Male, age 53, unknown 13.8
2223 Female, age 72, unknown 12.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.7
Samples: 139

Max nTPM: 60.5
Min nTPM: 16.2
Std nTPM: 9.6
Median nTPM: 31.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 60.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 54.3
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 52.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 51.8
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 51.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 51.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 50.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 49.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 49.3
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 48.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 47.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.2
FF:10158-103A5 76 years, female 43.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.6
Pig sample Sample description nTPM
Midbrain
nTPM: 24.3
Samples: 4

Max nTPM: 30.7
Min nTPM: 20.8
Sample A Female 20.9
Sample B Female 20.8
Sample C Male 30.7
Sample D Male 24.7
Periaqueductal gray
nTPM: 19.6
Samples: 3

Max nTPM: 23.4
Min nTPM: 16.8
Sample B Female 18.6
Sample C Male 23.4
Sample D Male 16.8
Substantia nigra
nTPM: 22.5
Samples: 4

Max nTPM: 27.1
Min nTPM: 17.0
Sample A Female 26.8
Sample B Female 18.9
Sample C Male 27.1
Sample D Male 17.0
Superior colliculi
nTPM: 24.6
Samples: 4

Max nTPM: 27.2
Min nTPM: 21.3
Sample A Female 24.6
Sample B Female 21.3
Sample C Male 27.2
Sample D Male 25.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.9
Samples: 4

Max nTPM: 53.8
Min nTPM: 42.3
Sample A Male 53.8
Sample B Male 42.9
Sample C Female 42.3
Sample D Female 48.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
67979028 Antisense, RP_040923_02_A09, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.