BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:21.5 nTPM
HPA:21.5 nTPM
GTEx:22.0 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA000750
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 21.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 20.4
1781 Male, age 74, unknown 25.0
2481 Female, age 94, left hemisphere 21.9
2289 Male, age 61, right hemisphere 20.5
1854 Male, age 80, left hemisphere 19.3
1857 Female, age 85, left hemisphere 19.3
2288 Male, age 75, left hemisphere 19.3
2290 Female, age 72, unknown 19.3
2846 Female, age 79, unknown 18.4
Claustrum
nTPM: 20.7
2645 Female, age 72, unknown 22.6
2284 Female, age 91, both hemispheres 21.5
2198 Male, age 80, both hemispheres 21.2
2491 Male, age 75, both hemispheres 21.1
2568 Male, age 61, both hemispheres 20.8
1956 Male, age 74, unknown 20.5
2292 Female, age 85, both hemispheres 20.3
2392 Female, age 94, both hemispheres 19.7
2196 Female, age 79, unknown 18.4
Globus pallidus, externus
nTPM: 21.4
2646 Male, age 61, right hemisphere 24.0
2772 Female, age 79, unknown 21.8
1996 Male, age 80, right hemisphere 21.5
2567 Female, age 72, unknown 20.0
2395 Male, age 75, both hemispheres 19.9
Globus pallidus, internus
nTPM: 21.5
2483 Female, age 94, right hemisphere 24.2
2037 Male, age 80, right hemisphere 21.8
2778 Female, age 91, both hemispheres 21.8
1818 Male, age 74, unknown 21.3
2287 Male, age 75, right hemisphere 20.7
2566 Female, age 72, unknown 20.6
2111 Female, age 85, right hemisphere 19.8
Nucleus accumbens
nTPM: 19.1
2286 Male, age 75, left hemisphere 20.0
2732 Male, age 80, right hemisphere 20.0
1783 Male, age 74, unknown 19.4
2391 Female, age 94, left hemisphere 19.1
2698 Female, age 72, unknown 18.9
1806 Female, age 85, left hemisphere 18.6
1856 Female, age 91, right hemisphere 18.5
2824 Male, age 61, right hemisphere 18.4
Nucleus basalis of Meynert
nTPM: 20.6
2569 Male, age 61, both hemispheres 23.9
2484 Female, age 94, left hemisphere 19.9
2821 Male, age 75, both hemispheres 19.8
2393 Male, age 80, right hemisphere 19.0
Nucleus of the diagonal band
nTPM: 20.2
2029 Male, age 61, right hemisphere 22.3
2775 Male, age 80, right hemisphere 21.5
1812 Female, age 91, both hemispheres 19.5
2195 Female, age 85, both hemispheres 19.4
1979 Male, age 74, unknown 18.5
Olfactory tubercle
nTPM: 20.5
1998 Female, age 91, both hemispheres 21.5
2856 Male, age 75, right hemisphere 20.5
1846 Male, age 80, right hemisphere 20.1
2487 Female, age 94, left hemisphere 19.9
Putamen
nTPM: 19.2
2482 Female, age 94, left hemisphere 20.7
2647 Male, age 75, left hemisphere 20.3
2489 Female, age 72, unknown 19.3
1937 Female, age 91, right hemisphere 18.7
1838 Male, age 80, right hemisphere 18.6
2466 Female, age 79, unknown 18.6
1829 Male, age 74, unknown 18.4
Septal nuclei
nTPM: 19.6
2031 Female, age 72, unknown 20.9
2629 Female, age 94, right hemisphere 20.4
2009 Female, age 91, both hemispheres 19.7
2199 Male, age 80, right hemisphere 19.7
1960 Male, age 74, unknown 19.1
2059 Female, age 85, both hemispheres 19.1
2394 Male, age 61, left hemisphere 18.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 22.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 22.0
Samples: 246

Max nTPM: 105.5
Min nTPM: 2.3
Std nTPM: 16.0
Median nTPM: 17.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 105.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 75.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 74.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 71.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 67.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 66.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 63.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 62.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 61.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 59.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 58.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 18.7
Samples: 246

Max nTPM: 89.8
Min nTPM: 2.0
Std nTPM: 13.0
Median nTPM: 15.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 89.8
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 64.1
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 59.0
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 55.2
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 53.4
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 52.6
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 52.3
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 50.3
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 48.2
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 46.2
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 45.9
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Brain - Putamen (basal ganglia)
Average nTPM: 21.7
Samples: 205

Max nTPM: 78.0
Min nTPM: 2.0
Std nTPM: 15.7
Median nTPM: 18.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 78.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 70.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 68.2
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 66.4
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 64.9
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 64.5
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 64.4
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 64.1
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 62.3
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 58.0
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 55.6
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The Human Protein Atlas

The Human Protein Atlas project is funded
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