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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:104.5 nTPM
HPA:104.5 nTPM
GTEx:223.1 nTPM
FANTOM5:144.6 Scaled Tags Per Million
Pig:41.9 nTPM
Mouse:88.5 nTPM
Allen mouse:5.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 104.5
Sample id Sample description nTPM
Amygdala
nTPM: 71.3
2814 Male, age 76, right hemisphere 84.0
2517 Female, age 94, left hemisphere 80.8
1987 Female, age 91, left hemisphere 75.8
2514 Male, age 75, right hemisphere 59.7
2695 Female, age 67, right hemisphere 56.1
Basal amygdala
nTPM: 104.5
2827 Female, age 67, right hemisphere 120.8
2685 Female, age 94, left hemisphere 119.5
2243 Female, age 91, right hemisphere 111.2
2110 Male, age 80, left hemisphere 99.5
2609 Male, age 75, right hemisphere 89.7
1955 Male, age 76, both hemispheres 86.0
Central amygdala
nTPM: 95.8
2826 Female, age 94, left hemisphere 142.1
2239 Male, age 80, left hemisphere 105.5
2701 Female, age 91, right hemisphere 79.1
1905 Male, age 76, both hemispheres 78.2
2515 Male, age 75, right hemisphere 74.3
Corticomedial amygdala
nTPM: 93.2
2535 Female, age 67, right hemisphere 120.5
2829 Male, age 80, left hemisphere 109.0
2242 Female, age 91, right hemisphere 96.3
2429 Female, age 94, left hemisphere 91.5
2240 Male, age 76, both hemispheres 71.3
2428 Male, age 75, right hemisphere 70.4
Lateral amygdala
nTPM: 101.2
2534 Female, age 94, left hemisphere 143.4
2256 Male, age 80, left hemisphere 109.8
2255 Female, age 91, right hemisphere 95.9
2830 Female, age 67, right hemisphere 94.9
1883 Male, age 76, both hemispheres 93.9
2516 Male, age 75, right hemisphere 69.1
Stria terminalis, bed nucleus
nTPM: 102.8
2486 Female, age 94, both hemispheres 117.9
1974 Female, age 91, both hemispheres 112.0
2201 Male, age 74, unknown 78.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 223.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 223.1
Samples: 152

Max nTPM: 527.2
Min nTPM: 48.5
Std nTPM: 78.8
Median nTPM: 219.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 527.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 446.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 403.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 396.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 389.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 387.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 379.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 349.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 348.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 348.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 348.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 347.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 336.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 336.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 332.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 327.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 320.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 319.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 312.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 306.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 304.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 303.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 301.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 294.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 294.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 292.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 290.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 288.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 288.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 287.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 287.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 285.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 284.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 281.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 279.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 270.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 265.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 265.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 264.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 261.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 258.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 258.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 256.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 255.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 255.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 254.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 253.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 253.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 252.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 247.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 245.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 245.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 244.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 242.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 242.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 241.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 241.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 236.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 236.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 236.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 235.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 234.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 234.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 233.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 233.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 231.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 230.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 229.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 226.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 224.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 224.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 223.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 222.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 222.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 221.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 220.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 218.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 218.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 217.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 216.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 216.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 216.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 215.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 213.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 213.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 212.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 212.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 211.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 209.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 208.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 204.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 203.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 200.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 198.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 197.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 196.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 195.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 195.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 190.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 189.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 188.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 186.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 185.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 183.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 183.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 183.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 178.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 177.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 176.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 173.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 167.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 167.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 167.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 165.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 164.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 163.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 162.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 162.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 160.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 158.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 157.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 153.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 151.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 151.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 151.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 151.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 150.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 147.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 144.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 143.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 142.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 137.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 136.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 135.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 131.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 126.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 124.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 124.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 122.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 120.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 119.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 116.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 110.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 106.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 102.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 101.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 100.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 95.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 86.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 80.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 57.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 48.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 144.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 144.6
FF:10151-102I7 76 years, female 144.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 41.9
Pig sample Sample description nTPM
Amygdala
nTPM: 41.9
Samples: 4

Max nTPM: 52.2
Min nTPM: 33.3
Sample A Female 52.2
Sample B Female 33.3
Sample C Male 46.1
Sample D Male 35.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 88.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 88.5
Samples: 4

Max nTPM: 109.8
Min nTPM: 77.3
Sample A Male 86.9
Sample B Male 79.9
Sample C Female 109.8
Sample D Female 77.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 5.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.4
2089 Antisense, RP_Baylor_103357, Mouse strain C57BL/6J (56 days, male) 5.4
2090 Antisense, RP_Baylor_103357, Mouse strain C57BL/6J (56 days, male) 1.7

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