BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:2.0 nTPM
HPA:2.0 nTPM
GTEx:13.5 nTPM
FANTOM5:272.2 Scaled Tags Per Million
Pig:17.7 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 2.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.9
1781 Male, age 74, unknown 3.2
2288 Male, age 75, left hemisphere 2.7
2289 Male, age 61, right hemisphere 2.0
1857 Female, age 85, left hemisphere 1.6
2290 Female, age 72, unknown 1.6
2481 Female, age 94, left hemisphere 1.4
2846 Female, age 79, unknown 1.3
1854 Male, age 80, left hemisphere 1.2
Claustrum
nTPM: 0.8
2292 Female, age 85, both hemispheres 2.1
2196 Female, age 79, unknown 1.6
2284 Female, age 91, both hemispheres 1.0
2568 Male, age 61, both hemispheres 0.9
2645 Female, age 72, unknown 0.7
2198 Male, age 80, both hemispheres 0.5
1956 Male, age 74, unknown 0.4
2491 Male, age 75, both hemispheres 0.1
2392 Female, age 94, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.9
2395 Male, age 75, both hemispheres 1.6
1996 Male, age 80, right hemisphere 1.0
2772 Female, age 79, unknown 0.9
2567 Female, age 72, unknown 0.6
2646 Male, age 61, right hemisphere 0.4
Globus pallidus, internus
nTPM: 0.8
2566 Female, age 72, unknown 1.6
2037 Male, age 80, right hemisphere 1.3
2483 Female, age 94, right hemisphere 1.1
2778 Female, age 91, both hemispheres 0.8
1818 Male, age 74, unknown 0.5
2287 Male, age 75, right hemisphere 0.1
2111 Female, age 85, right hemisphere 0.0
Nucleus accumbens
nTPM: 1.8
1783 Male, age 74, unknown 3.2
2698 Female, age 72, unknown 3.1
2732 Male, age 80, right hemisphere 2.4
1806 Female, age 85, left hemisphere 1.9
1856 Female, age 91, right hemisphere 1.9
2824 Male, age 61, right hemisphere 1.3
2286 Male, age 75, left hemisphere 0.4
2391 Female, age 94, left hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 1.8
2484 Female, age 94, left hemisphere 2.5
2821 Male, age 75, both hemispheres 1.8
2569 Male, age 61, both hemispheres 1.5
2393 Male, age 80, right hemisphere 1.4
Nucleus of the diagonal band
nTPM: 2.0
1979 Male, age 74, unknown 5.5
1812 Female, age 91, both hemispheres 1.7
2195 Female, age 85, both hemispheres 1.7
2775 Male, age 80, right hemisphere 0.8
2029 Male, age 61, right hemisphere 0.3
Olfactory tubercle
nTPM: 0.8
1846 Male, age 80, right hemisphere 1.4
2487 Female, age 94, left hemisphere 1.0
1998 Female, age 91, both hemispheres 0.4
2856 Male, age 75, right hemisphere 0.3
Putamen
nTPM: 1.2
1838 Male, age 80, right hemisphere 1.8
2482 Female, age 94, left hemisphere 1.7
2489 Female, age 72, unknown 1.7
2647 Male, age 75, left hemisphere 1.5
1937 Female, age 91, right hemisphere 1.1
1829 Male, age 74, unknown 0.3
2466 Female, age 79, unknown 0.1
Septal nuclei
nTPM: 1.1
2629 Female, age 94, right hemisphere 1.8
1960 Male, age 74, unknown 1.2
2031 Female, age 72, unknown 1.2
2059 Female, age 85, both hemispheres 1.2
2199 Male, age 80, right hemisphere 1.0
2009 Female, age 91, both hemispheres 0.8
2394 Male, age 61, left hemisphere 0.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.4
Samples: 246

Max nTPM: 28.9
Min nTPM: 5.1
Std nTPM: 3.1
Median nTPM: 9.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 28.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 23.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 20.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 19.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 17.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 17.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 17.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 16.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 16.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 16.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 16.7
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 13.5
Samples: 246

Max nTPM: 40.2
Min nTPM: 6.1
Std nTPM: 3.9
Median nTPM: 13.1
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 40.2
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 32.7
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 23.7
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 23.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 22.4
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 22.3
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 22.2
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 21.7
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 21.0
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 20.6
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 20.5
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 10.6
Samples: 205

Max nTPM: 23.0
Min nTPM: 5.5
Std nTPM: 3.2
Median nTPM: 9.9
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 23.0
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 21.5
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 20.4
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 19.9
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 19.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 18.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 18.0
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 16.8
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 16.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 16.6
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 16.5
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 272.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 272.2
FF:10164-103B2 76 years, female 272.2
Globus pallidus
Scaled Tags Per Million: 255.2
FF:10175-103C4 60 years, female 323.6
FF:10161-103A8 76 years, female 186.8
Nucleus accumbens
Scaled Tags Per Million: 88.6
FF:10037-101F1 23-56 years, mixed 88.6
Putamen
Scaled Tags Per Million: 243.6
FF:10176-103C5 60 years, female 243.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 17.7
Pig sample Sample description nTPM
Caudate
nTPM: 14.3
Samples: 4

Max nTPM: 15.5
Min nTPM: 12.8
Sample A Female 14.1
Sample B Female 15.5
Sample C Male 14.7
Sample D Male 12.8
Putamen
nTPM: 10.1
Samples: 4

Max nTPM: 13.2
Min nTPM: 8.8
Sample A Female 13.2
Sample B Female 9.1
Sample C Male 8.8
Sample D Male 9.1
Septum
nTPM: 17.7
Samples: 4

Max nTPM: 22.2
Min nTPM: 13.3
Sample A Female 22.2
Sample B Female 19.2
Sample C Male 16.2
Sample D Male 13.3
Ventral pallidum
nTPM: 13.6
Samples: 4

Max nTPM: 16.0
Min nTPM: 10.0
Sample A Female 15.9
Sample B Female 16.0
Sample C Male 10.0
Sample D Male 12.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.