BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:45.2 nTPM
HPA:45.2 nTPM
GTEx:51.5 nTPM
FANTOM5:53.7 Scaled Tags Per Million
Pig:41.7 nTPM
Mouse:83.9 nTPM
Allen mouse:9.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA018221
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 45.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.5
1781 Male, age 74, unknown 39.9
2846 Female, age 79, unknown 34.5
2289 Male, age 61, right hemisphere 34.2
1857 Female, age 85, left hemisphere 33.9
2290 Female, age 72, unknown 32.4
2288 Male, age 75, left hemisphere 31.8
1854 Male, age 80, left hemisphere 30.9
2481 Female, age 94, left hemisphere 30.2
Claustrum
nTPM: 38.2
2491 Male, age 75, both hemispheres 46.8
2568 Male, age 61, both hemispheres 41.5
2198 Male, age 80, both hemispheres 38.5
2284 Female, age 91, both hemispheres 38.0
2645 Female, age 72, unknown 37.7
2392 Female, age 94, both hemispheres 36.8
2196 Female, age 79, unknown 36.2
1956 Male, age 74, unknown 34.5
2292 Female, age 85, both hemispheres 34.1
Globus pallidus, externus
nTPM: 27.4
2646 Male, age 61, right hemisphere 31.8
2395 Male, age 75, both hemispheres 28.0
2772 Female, age 79, unknown 27.9
1996 Male, age 80, right hemisphere 25.5
2567 Female, age 72, unknown 23.7
Globus pallidus, internus
nTPM: 28.6
2483 Female, age 94, right hemisphere 32.7
2287 Male, age 75, right hemisphere 31.9
2778 Female, age 91, both hemispheres 30.0
1818 Male, age 74, unknown 28.1
2566 Female, age 72, unknown 27.9
2037 Male, age 80, right hemisphere 25.8
2111 Female, age 85, right hemisphere 23.8
Nucleus accumbens
nTPM: 37.3
1856 Female, age 91, right hemisphere 45.4
2824 Male, age 61, right hemisphere 43.4
1783 Male, age 74, unknown 39.1
2698 Female, age 72, unknown 37.3
1806 Female, age 85, left hemisphere 36.6
2732 Male, age 80, right hemisphere 35.0
2286 Male, age 75, left hemisphere 31.7
2391 Female, age 94, left hemisphere 30.2
Nucleus basalis of Meynert
nTPM: 31.6
2484 Female, age 94, left hemisphere 33.9
2821 Male, age 75, both hemispheres 32.2
2569 Male, age 61, both hemispheres 31.0
2393 Male, age 80, right hemisphere 29.3
Nucleus of the diagonal band
nTPM: 45.2
2195 Female, age 85, both hemispheres 46.0
2775 Male, age 80, right hemisphere 45.4
2029 Male, age 61, right hemisphere 45.3
1812 Female, age 91, both hemispheres 45.2
1979 Male, age 74, unknown 44.2
Olfactory tubercle
nTPM: 44.5
1998 Female, age 91, both hemispheres 47.8
1846 Male, age 80, right hemisphere 44.4
2487 Female, age 94, left hemisphere 43.8
2856 Male, age 75, right hemisphere 42.0
Putamen
nTPM: 31.7
1838 Male, age 80, right hemisphere 36.2
1937 Female, age 91, right hemisphere 35.1
2466 Female, age 79, unknown 34.2
2482 Female, age 94, left hemisphere 30.5
1829 Male, age 74, unknown 29.8
2647 Male, age 75, left hemisphere 28.6
2489 Female, age 72, unknown 27.5
Septal nuclei
nTPM: 40.0
2031 Female, age 72, unknown 45.4
2629 Female, age 94, right hemisphere 42.4
2009 Female, age 91, both hemispheres 42.3
1960 Male, age 74, unknown 41.1
2059 Female, age 85, both hemispheres 40.7
2394 Male, age 61, left hemisphere 36.4
2199 Male, age 80, right hemisphere 32.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 51.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 33.7
Samples: 246

Max nTPM: 72.4
Min nTPM: 8.6
Std nTPM: 12.2
Median nTPM: 32.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 72.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 70.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 66.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 65.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 62.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 62.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 58.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 58.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 58.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 57.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 56.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 51.5
Samples: 246

Max nTPM: 104.1
Min nTPM: 14.3
Std nTPM: 17.4
Median nTPM: 52.8
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 104.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 99.4
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 95.4
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 95.3
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 93.3
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 88.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 88.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 87.5
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 86.6
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 81.9
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 81.8
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Brain - Putamen (basal ganglia)
Average nTPM: 33.2
Samples: 205

Max nTPM: 72.4
Min nTPM: 9.5
Std nTPM: 13.1
Median nTPM: 33.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 72.4
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 65.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 63.0
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 62.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 62.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 59.9
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 59.0
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 56.9
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 56.8
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 56.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 56.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 44.3
FF:10164-103B2 76 years, female 44.3
Globus pallidus
Scaled Tags Per Million: 16.4
FF:10175-103C4 60 years, female 18.9
FF:10161-103A8 76 years, female 13.9
Nucleus accumbens
Scaled Tags Per Million: 35.9
FF:10037-101F1 23-56 years, mixed 35.9
Putamen
Scaled Tags Per Million: 53.7
FF:10176-103C5 60 years, female 53.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 41.7
Pig sample Sample description nTPM
Caudate
nTPM: 41.8
Samples: 4

Max nTPM: 47.2
Min nTPM: 35.5
Sample A Female 35.5
Sample B Female 47.1
Sample C Male 47.2
Sample D Male 37.3
Putamen
nTPM: 40.7
Samples: 4

Max nTPM: 55.1
Min nTPM: 22.0
Sample A Female 22.0
Sample B Female 42.5
Sample C Male 55.1
Sample D Male 43.0
Septum
nTPM: 28.6
Samples: 4

Max nTPM: 34.1
Min nTPM: 17.5
Sample A Female 34.1
Sample B Female 34.1
Sample C Male 28.8
Sample D Male 17.5
Ventral pallidum
nTPM: 34.3
Samples: 4

Max nTPM: 46.3
Min nTPM: 28.9
Sample A Female 31.5
Sample B Female 46.3
Sample C Male 28.9
Sample D Male 30.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 83.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 83.9
Samples: 4

Max nTPM: 96.3
Min nTPM: 77.8
Sample A Male 80.0
Sample B Male 96.3
Sample C Female 77.8
Sample D Female 81.4
Septum
nTPM: 81.0
Samples: 4

Max nTPM: 85.6
Min nTPM: 75.4
Sample A Male 85.6
Sample B Male 75.4
Sample C Female 84.0
Sample D Female 79.0
Ventral forebrain
nTPM: 71.1
Samples: 4

Max nTPM: 78.5
Min nTPM: 65.7
Sample A Male 68.4
Sample B Male 78.5
Sample C Female 71.6
Sample D Female 65.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 9.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 9.0
68637706 Antisense, RP_050126_01_D09, Mouse strain C57BL/6J (56 days, male) 9.0
Pallidum
Expression energy: 8.1
68637706 Antisense, RP_050126_01_D09, Mouse strain C57BL/6J (56 days, male) 8.1

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