MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:38.5 nTPM
HPA:38.5 nTPM
GTEx:30.7 nTPM
FANTOM5:31.1 Scaled Tags Per Million
Pig:7.2 nTPM
Mouse:27.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.4
2828 Female, age 72, unknown 39.7
2586 Male, age 75, left hemisphere 38.0
2666 Male, age 74, left hemisphere 36.5
1827 Male, age 72, unknown 31.7
1833 Male, age 53, unknown 30.5
1870 Female, age 42, unknown 30.4
2411 Female, age 72, unknown 29.3
1830 Male, age 51, unknown 27.2
2219 Male, age 76, both hemispheres 26.5
2019 Male, age 18, unknown 24.7
Dorsal raphe nucleus
nTPM: 35.6
2016 Female, age 72, unknown 44.3
2047 Male, age 72, unknown 36.8
1828 Male, age 53, unknown 36.4
2298 Female, age 72, unknown 31.5
2750 Male, age 76, both hemispheres 28.8
Inferior colliculus
nTPM: 33.4
1848 Female, age 42, unknown 40.6
2849 Male, age 72, unknown 32.5
1890 Male, age 53, unknown 31.6
2097 Female, age 72, unknown 28.8
Median raphe nucleus
nTPM: 32.8
2220 Male, age 76, midline 32.8
Pedunculopontine tegmental nucleus
nTPM: 28.8
2334 Male, age 80, both hemispheres 32.9
1921 Female, age 85, both hemispheres 31.4
2338 Male, age 61, both hemispheres 22.0
Periaquaductal grey, anterior
nTPM: 32.5
1795 Male, age 51, unknown 34.0
1947 Male, age 18, unknown 32.1
2502 Female, age 75, unknown 31.6
Periaquaductal grey, dorsal
nTPM: 36.2
1831 Male, age 72, unknown 37.9
2850 Male, age 76, both hemispheres 37.8
1840 Male, age 53, unknown 35.9
2464 Female, age 72, unknown 33.2
Periaquaductal grey, lateral
nTPM: 35.6
2053 Male, age 18, unknown 41.7
2140 Male, age 76, both hemispheres 34.7
2272 Male, age 74, both hemispheres 30.5
Pretectal area
nTPM: 33.4
2224 Female, age 72, unknown 36.1
2316 Male, age 76, right hemisphere 35.9
2825 Male, age 18, unknown 35.1
1817 Female, age 42, unknown 34.8
1816 Male, age 51, unknown 34.7
1815 Male, age 53, unknown 34.3
2667 Female, age 75, unknown 34.1
2273 Male, age 74, both hemispheres 34.0
2407 Male, age 75, both hemispheres 33.2
1944 Female, age 72, unknown 30.5
2007 Male, age 72, unknown 24.8
Red nucleus
nTPM: 30.2
2503 Female, age 72, unknown 36.7
1904 Male, age 53, unknown 32.6
2227 Male, age 72, unknown 32.5
1821 Female, age 72, unknown 32.3
2769 Male, age 72, unknown 32.1
1954 Female, age 42, unknown 31.5
2588 Male, age 74, left hemisphere 31.0
1865 Male, age 51, unknown 29.1
2823 Male, age 76, right hemisphere 29.1
2785 Male, age 18, unknown 25.7
2725 Female, age 75, unknown 25.2
2584 Male, age 75, left hemisphere 24.7
Substantia nigra
nTPM: 38.5
2699 Male, age 18, unknown 54.9
2665 Male, age 74, both hemispheres 44.5
1851 Male, age 51, unknown 38.9
2590 Female, age 75, unknown 38.4
1916 Female, age 42, unknown 38.0
2409 Female, age 72, unknown 36.5
2241 Male, age 72, unknown 35.1
2583 Male, age 75, right hemisphere 34.8
1889 Female, age 72, unknown 33.5
1941 Male, age 53, unknown 30.5
Superior colliculus
nTPM: 35.4
2668 Female, age 75, unknown 42.4
1995 Male, age 72, unknown 39.9
2664 Male, age 75, both hemispheres 39.3
1839 Male, age 51, unknown 36.3
2087 Female, age 72, unknown 35.6
2587 Male, age 74, left hemisphere 35.0
1796 Male, age 53, unknown 33.9
1913 Female, age 42, unknown 32.3
2261 Male, age 18, unknown 31.4
1895 Male, age 76, right hemisphere 28.3
Ventral tegmental area
nTPM: 34.9
2021 Male, age 53, unknown 40.7
1942 Male, age 51, unknown 35.3
1915 Female, age 42, unknown 35.1
2410 Female, age 72, unknown 34.8
2218 Male, age 76, both hemispheres 31.9
2223 Female, age 72, unknown 31.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.7
Samples: 139

Max nTPM: 87.9
Min nTPM: 3.2
Std nTPM: 16.9
Median nTPM: 27.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 87.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 79.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 69.6
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 69.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 69.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 69.3
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 61.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 61.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 60.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 60.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 59.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.1
FF:10158-103A5 76 years, female 31.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.2
Pig sample Sample description nTPM
Midbrain
nTPM: 6.2
Samples: 4

Max nTPM: 10.6
Min nTPM: 3.3
Sample A Female 6.5
Sample B Female 10.6
Sample C Male 4.5
Sample D Male 3.3
Periaqueductal gray
nTPM: 7.2
Samples: 3

Max nTPM: 9.6
Min nTPM: 5.4
Sample B Female 9.6
Sample C Male 6.5
Sample D Male 5.4
Substantia nigra
nTPM: 6.8
Samples: 4

Max nTPM: 8.1
Min nTPM: 6.0
Sample A Female 6.7
Sample B Female 8.1
Sample C Male 6.0
Sample D Male 6.4
Superior colliculi
nTPM: 4.8
Samples: 4

Max nTPM: 5.2
Min nTPM: 4.4
Sample A Female 4.4
Sample B Female 4.4
Sample C Male 5.2
Sample D Male 5.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.6
Samples: 4

Max nTPM: 30.3
Min nTPM: 24.6
Sample A Male 28.6
Sample B Male 27.0
Sample C Female 24.6
Sample D Female 30.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71789849 Antisense, RP_050921_03_G05, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.