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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:25.0 nTPM
HPA:25.0 nTPM
GTEx:42.8 nTPM
FANTOM5:15.5 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 25.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 25.0
2048 Male, age 55, midline 27.7
1981 Female, age 72, midline 25.2
2194 Female, age 79, both hemispheres 25.2
2816 Male, age 47, midline 24.5
2565 Male, age 75, midline 22.6
Cervical spinal cord, dorsal horn
nTPM: 24.5
1877 Male, age 55, unknown 26.1
2296 Male, age 66, both hemispheres 25.2
2069 Male, age 47, both hemispheres 24.4
2173 Female, age 72, unknown 24.2
2297 Male, age 75, both hemispheres 23.7
2721 Male, age 90, both hemispheres 23.4
Cervical spinal cord, ventral horn
nTPM: 23.9
2809 Male, age 90, both hemispheres 24.3
2098 Female, age 72, unknown 24.1
2820 Female, age 79, both hemispheres 24.0
2068 Male, age 55, unknown 23.8
2295 Male, age 66, both hemispheres 23.8
2480 Male, age 75, both hemispheres 23.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 42.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 42.8
Samples: 159

Max nTPM: 189.0
Min nTPM: 0.0
Std nTPM: 47.7
Median nTPM: 36.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 189.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 188.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 168.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 153.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 152.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 152.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 139.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 129.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 128.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 127.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 124.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 119.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 118.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 115.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 112.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 109.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 108.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 108.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 108.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 106.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 106.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 106.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 102.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 100.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 100.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 99.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 99.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 98.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 96.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 89.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 88.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 87.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 84.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 84.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 82.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 79.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 78.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 78.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 77.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 73.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 71.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 70.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 70.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 70.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 66.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 64.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 62.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 61.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 61.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 60.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 60.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 58.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 58.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 58.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 56.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 55.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 55.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 53.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 53.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 52.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 50.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 49.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 47.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 47.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 47.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 46.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 45.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 45.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 45.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 45.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 45.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 44.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 43.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 42.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 41.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 39.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 39.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 37.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 36.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 36.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 35.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 31.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 28.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 28.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 28.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 26.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 20.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 4.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 2.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 0.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 0.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 0.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 0.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 0.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 0.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 0.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 0.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 0.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 0.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 0.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 0.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 0.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 0.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 0.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 0.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 0.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 0.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 0.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 0.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 0.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 0.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 0.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 0.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 0.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 0.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 0.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 0.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 0.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 0.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 0.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 0.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 0.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 0.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 0.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 0.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 0.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 0.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 0.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 0.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 0.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 0.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 0.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 0.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 0.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 0.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 0.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 0.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 0.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 0.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 0.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 0.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 0.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 0.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 0.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 0.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 0.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 0.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 0.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 0.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 0.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 0.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 0.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 0.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 0.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 15.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 15.5
FF:10159-103A6 76 years, female 31.0
FF:10181-103D1 60 years, female 0.0

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