MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:26.3 nTPM
HPA:26.3 nTPM
GTEx:67.0 nTPM
FANTOM5:27.0 Scaled Tags Per Million
Mouse:16.0 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.3
2828 Female, age 72, unknown 26.6
2586 Male, age 75, left hemisphere 25.2
1827 Male, age 72, unknown 24.8
2411 Female, age 72, unknown 24.7
1830 Male, age 51, unknown 24.4
1870 Female, age 42, unknown 24.4
2019 Male, age 18, unknown 24.2
1833 Male, age 53, unknown 23.5
2666 Male, age 74, left hemisphere 23.3
2219 Male, age 76, both hemispheres 21.7
Dorsal raphe nucleus
nTPM: 25.1
2016 Female, age 72, unknown 27.1
1828 Male, age 53, unknown 25.1
2047 Male, age 72, unknown 24.6
2750 Male, age 76, both hemispheres 24.5
2298 Female, age 72, unknown 24.4
Inferior colliculus
nTPM: 24.4
1848 Female, age 42, unknown 24.9
2849 Male, age 72, unknown 24.6
2097 Female, age 72, unknown 24.3
1890 Male, age 53, unknown 23.5
Median raphe nucleus
nTPM: 24.6
2220 Male, age 76, midline 24.6
Pedunculopontine tegmental nucleus
nTPM: 24.2
1921 Female, age 85, both hemispheres 24.2
2338 Male, age 61, both hemispheres 24.2
2334 Male, age 80, both hemispheres 24.0
Periaquaductal grey, anterior
nTPM: 25.2
1947 Male, age 18, unknown 26.0
2502 Female, age 75, unknown 25.0
1795 Male, age 51, unknown 24.7
Periaquaductal grey, dorsal
nTPM: 25.9
1840 Male, age 53, unknown 27.1
2850 Male, age 76, both hemispheres 27.0
1831 Male, age 72, unknown 24.9
2464 Female, age 72, unknown 24.4
Periaquaductal grey, lateral
nTPM: 26.3
2140 Male, age 76, both hemispheres 27.3
2272 Male, age 74, both hemispheres 27.0
2053 Male, age 18, unknown 24.6
Pretectal area
nTPM: 25.2
2273 Male, age 74, both hemispheres 27.8
2316 Male, age 76, right hemisphere 27.3
2667 Female, age 75, unknown 26.2
1815 Male, age 53, unknown 25.3
1817 Female, age 42, unknown 25.2
2007 Male, age 72, unknown 24.9
1816 Male, age 51, unknown 24.4
1944 Female, age 72, unknown 24.4
2825 Male, age 18, unknown 24.2
2224 Female, age 72, unknown 23.7
2407 Male, age 75, both hemispheres 23.7
Red nucleus
nTPM: 24.4
2823 Male, age 76, right hemisphere 25.8
2725 Female, age 75, unknown 24.9
2785 Male, age 18, unknown 24.9
2503 Female, age 72, unknown 24.7
1865 Male, age 51, unknown 24.6
2769 Male, age 72, unknown 24.6
2227 Male, age 72, unknown 24.5
2588 Male, age 74, left hemisphere 24.4
1904 Male, age 53, unknown 24.2
1954 Female, age 42, unknown 24.2
1821 Female, age 72, unknown 24.1
2584 Male, age 75, left hemisphere 21.7
Substantia nigra
nTPM: 24.4
1851 Male, age 51, unknown 25.3
2699 Male, age 18, unknown 25.2
2409 Female, age 72, unknown 24.9
2665 Male, age 74, both hemispheres 24.9
2590 Female, age 75, unknown 24.7
1916 Female, age 42, unknown 24.6
2241 Male, age 72, unknown 24.4
2583 Male, age 75, right hemisphere 23.5
1889 Female, age 72, unknown 23.4
1941 Male, age 53, unknown 22.9
Superior colliculus
nTPM: 24.9
1796 Male, age 53, unknown 26.3
2587 Male, age 74, left hemisphere 26.2
2664 Male, age 75, both hemispheres 25.0
2087 Female, age 72, unknown 24.9
1839 Male, age 51, unknown 24.8
2261 Male, age 18, unknown 24.8
1895 Male, age 76, right hemisphere 24.5
1913 Female, age 42, unknown 24.5
1995 Male, age 72, unknown 24.5
2668 Female, age 75, unknown 23.2
Ventral tegmental area
nTPM: 25.0
2021 Male, age 53, unknown 25.9
2218 Male, age 76, both hemispheres 25.9
1915 Female, age 42, unknown 24.9
1942 Male, age 51, unknown 24.5
2410 Female, age 72, unknown 24.5
2223 Female, age 72, unknown 24.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 67.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.0
Samples: 139

Max nTPM: 532.8
Min nTPM: 0.0
Std nTPM: 89.7
Median nTPM: 22.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 532.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 330.5
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 286.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 286.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 280.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 267.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 242.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 237.4
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 215.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 211.1
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 209.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.0
FF:10158-103A5 76 years, female 27.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.1
Sample C Female 0.0
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
68920779 Antisense, RP_050303_01_B12, Mouse strain C57BL/6J (56 days, male) 2.4
68632148 Antisense, RP_050125_01_G06, Mouse strain C57BL/6J (56 days, male) 1.6
68443202 Antisense, RP_050111_01_E09, Mouse strain C57BL/6J (56 days, male) 0.3
74427062 Antisense, RP_051206_02_H11, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 2.4
68920779 Antisense, RP_050303_01_B12, Mouse strain C57BL/6J (56 days, male) 2.4
68632148 Antisense, RP_050125_01_G06, Mouse strain C57BL/6J (56 days, male) 1.6
68443202 Antisense, RP_050111_01_E09, Mouse strain C57BL/6J (56 days, male) 0.3
74427062 Antisense, RP_051206_02_H11, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 2.4
68920779 Antisense, RP_050303_01_B12, Mouse strain C57BL/6J (56 days, male) 2.4
68632148 Antisense, RP_050125_01_G06, Mouse strain C57BL/6J (56 days, male) 1.6
68443202 Antisense, RP_050111_01_E09, Mouse strain C57BL/6J (56 days, male) 0.3
74427062 Antisense, RP_051206_02_H11, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 2.4
68920779 Antisense, RP_050303_01_B12, Mouse strain C57BL/6J (56 days, male) 2.4
68632148 Antisense, RP_050125_01_G06, Mouse strain C57BL/6J (56 days, male) 1.6
68443202 Antisense, RP_050111_01_E09, Mouse strain C57BL/6J (56 days, male) 0.3
74427062 Antisense, RP_051206_02_H11, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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