BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:84.0 nTPM
HPA:84.0 nTPM
GTEx:37.2 nTPM
FANTOM5:51.6 Scaled Tags Per Million
Pig:4.8 nTPM
Mouse:0.9 nTPM
Allen mouse:1.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 84.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 61.7
1781 Male, age 74, unknown 68.0
2288 Male, age 75, left hemisphere 67.7
2289 Male, age 61, right hemisphere 67.2
2481 Female, age 94, left hemisphere 66.8
2846 Female, age 79, unknown 58.9
1854 Male, age 80, left hemisphere 57.9
2290 Female, age 72, unknown 54.0
1857 Female, age 85, left hemisphere 53.1
Claustrum
nTPM: 70.5
2292 Female, age 85, both hemispheres 79.1
1956 Male, age 74, unknown 76.6
2196 Female, age 79, unknown 71.0
2284 Female, age 91, both hemispheres 70.2
2198 Male, age 80, both hemispheres 69.6
2392 Female, age 94, both hemispheres 68.5
2645 Female, age 72, unknown 68.5
2568 Male, age 61, both hemispheres 65.9
2491 Male, age 75, both hemispheres 64.9
Globus pallidus, externus
nTPM: 82.9
2567 Female, age 72, unknown 91.4
1996 Male, age 80, right hemisphere 87.3
2646 Male, age 61, right hemisphere 82.5
2772 Female, age 79, unknown 76.7
2395 Male, age 75, both hemispheres 76.4
Globus pallidus, internus
nTPM: 84.0
2566 Female, age 72, unknown 92.2
2111 Female, age 85, right hemisphere 90.2
2778 Female, age 91, both hemispheres 89.4
2037 Male, age 80, right hemisphere 82.9
1818 Male, age 74, unknown 81.9
2287 Male, age 75, right hemisphere 80.6
2483 Female, age 94, right hemisphere 70.5
Nucleus accumbens
nTPM: 61.0
2391 Female, age 94, left hemisphere 74.1
2698 Female, age 72, unknown 65.7
2286 Male, age 75, left hemisphere 64.4
2732 Male, age 80, right hemisphere 64.4
1783 Male, age 74, unknown 56.6
1806 Female, age 85, left hemisphere 55.9
2824 Male, age 61, right hemisphere 54.9
1856 Female, age 91, right hemisphere 52.1
Nucleus basalis of Meynert
nTPM: 65.6
2569 Male, age 61, both hemispheres 75.1
2821 Male, age 75, both hemispheres 67.9
2484 Female, age 94, left hemisphere 60.5
2393 Male, age 80, right hemisphere 59.0
Nucleus of the diagonal band
nTPM: 61.5
2029 Male, age 61, right hemisphere 67.3
2195 Female, age 85, both hemispheres 65.3
1812 Female, age 91, both hemispheres 62.5
2775 Male, age 80, right hemisphere 60.6
1979 Male, age 74, unknown 51.7
Olfactory tubercle
nTPM: 60.5
2856 Male, age 75, right hemisphere 61.7
1998 Female, age 91, both hemispheres 61.3
1846 Male, age 80, right hemisphere 59.9
2487 Female, age 94, left hemisphere 59.0
Putamen
nTPM: 62.3
2647 Male, age 75, left hemisphere 73.1
2482 Female, age 94, left hemisphere 69.7
2489 Female, age 72, unknown 63.4
1829 Male, age 74, unknown 63.3
1937 Female, age 91, right hemisphere 58.6
2466 Female, age 79, unknown 57.8
1838 Male, age 80, right hemisphere 50.1
Septal nuclei
nTPM: 62.7
2394 Male, age 61, left hemisphere 65.9
2059 Female, age 85, both hemispheres 64.2
1960 Male, age 74, unknown 64.0
2629 Female, age 94, right hemisphere 63.8
2009 Female, age 91, both hemispheres 62.0
2031 Female, age 72, unknown 60.4
2199 Male, age 80, right hemisphere 58.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 37.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 32.1
Samples: 246

Max nTPM: 104.6
Min nTPM: 6.3
Std nTPM: 15.4
Median nTPM: 30.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 104.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 98.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 81.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 75.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 74.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 69.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 69.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 68.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 67.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 67.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 66.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 21.2
Samples: 246

Max nTPM: 101.2
Min nTPM: 5.3
Std nTPM: 13.6
Median nTPM: 17.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 101.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 72.9
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 65.4
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 65.2
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 62.3
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 58.3
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 55.0
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 54.4
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 54.3
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 53.3
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 49.3
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Brain - Putamen (basal ganglia)
Average nTPM: 37.2
Samples: 205

Max nTPM: 107.9
Min nTPM: 9.0
Std nTPM: 15.7
Median nTPM: 34.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 107.9
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 95.5
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 78.8
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 78.3
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 77.5
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 76.6
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 74.2
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 71.9
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 71.2
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 67.1
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 66.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 23.8
FF:10164-103B2 76 years, female 23.8
Globus pallidus
Scaled Tags Per Million: 51.6
FF:10161-103A8 76 years, female 67.7
FF:10175-103C4 60 years, female 35.5
Nucleus accumbens
Scaled Tags Per Million: 28.7
FF:10037-101F1 23-56 years, mixed 28.7
Putamen
Scaled Tags Per Million: 20.8
FF:10176-103C5 60 years, female 20.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 4.8
Pig sample Sample description nTPM
Caudate
nTPM: 4.8
Samples: 4

Max nTPM: 6.1
Min nTPM: 3.8
Sample A Female 3.8
Sample B Female 5.1
Sample C Male 6.1
Sample D Male 4.2
Putamen
nTPM: 4.7
Samples: 4

Max nTPM: 6.4
Min nTPM: 3.2
Sample A Female 3.2
Sample B Female 3.9
Sample C Male 6.4
Sample D Male 5.3
Septum
nTPM: 3.4
Samples: 4

Max nTPM: 4.5
Min nTPM: 2.0
Sample A Female 3.2
Sample B Female 3.8
Sample C Male 2.0
Sample D Male 4.5
Ventral pallidum
nTPM: 4.3
Samples: 4

Max nTPM: 5.4
Min nTPM: 3.4
Sample A Female 3.4
Sample B Female 5.4
Sample C Male 4.0
Sample D Male 4.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.9
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.2
Sample A Male 0.2
Sample B Male 0.5
Sample C Female 1.8
Sample D Female 1.2
Septum
nTPM: 0.8
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.5
Sample A Male 1.2
Sample B Male 0.7
Sample C Female 0.9
Sample D Female 0.5
Ventral forebrain
nTPM: 0.6
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.3
Sample A Male 0.9
Sample B Male 0.3
Sample C Female 0.7
Sample D Female 0.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.6
68445101 Antisense, RP_050111_02_G07, Mouse strain C57BL/6J (56 days, male) 3.1
71015388 Antisense, RP_050725_02_G10, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.9
68445101 Antisense, RP_050111_02_G07, Mouse strain C57BL/6J (56 days, male) 1.7
71015388 Antisense, RP_050725_02_G10, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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