MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:133.8 nTPM
HPA:133.8 nTPM
GTEx:75.1 nTPM
FANTOM5:508.9 Scaled Tags Per Million
Pig:109.2 nTPM
Mouse:80.6 nTPM
Allen mouse:9.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 133.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 100.7
2019 Male, age 18, unknown 136.6
2411 Female, age 72, unknown 126.0
1830 Male, age 51, unknown 124.8
1870 Female, age 42, unknown 117.4
1833 Male, age 53, unknown 116.4
2666 Male, age 74, left hemisphere 103.3
2828 Female, age 72, unknown 87.3
2586 Male, age 75, left hemisphere 80.2
1827 Male, age 72, unknown 72.0
2219 Male, age 76, both hemispheres 42.6
Dorsal raphe nucleus
nTPM: 69.2
2750 Male, age 76, both hemispheres 107.3
2016 Female, age 72, unknown 72.0
1828 Male, age 53, unknown 71.1
2047 Male, age 72, unknown 51.1
2298 Female, age 72, unknown 44.5
Inferior colliculus
nTPM: 65.1
1890 Male, age 53, unknown 72.9
1848 Female, age 42, unknown 67.9
2097 Female, age 72, unknown 65.2
2849 Male, age 72, unknown 54.5
Median raphe nucleus
nTPM: 58.1
2220 Male, age 76, midline 58.1
Pedunculopontine tegmental nucleus
nTPM: 72.8
2334 Male, age 80, both hemispheres 83.7
1921 Female, age 85, both hemispheres 69.2
2338 Male, age 61, both hemispheres 65.5
Periaquaductal grey, anterior
nTPM: 56.9
2502 Female, age 75, unknown 66.0
1947 Male, age 18, unknown 58.8
1795 Male, age 51, unknown 45.8
Periaquaductal grey, dorsal
nTPM: 50.4
2464 Female, age 72, unknown 76.0
1831 Male, age 72, unknown 55.0
2850 Male, age 76, both hemispheres 40.0
1840 Male, age 53, unknown 30.5
Periaquaductal grey, lateral
nTPM: 57.0
2272 Male, age 74, both hemispheres 65.4
2053 Male, age 18, unknown 58.9
2140 Male, age 76, both hemispheres 46.6
Pretectal area
nTPM: 70.1
1815 Male, age 53, unknown 95.3
2007 Male, age 72, unknown 82.4
1817 Female, age 42, unknown 80.2
2407 Male, age 75, both hemispheres 79.0
2316 Male, age 76, right hemisphere 78.5
2273 Male, age 74, both hemispheres 66.0
2667 Female, age 75, unknown 64.9
2825 Male, age 18, unknown 60.2
1944 Female, age 72, unknown 59.9
1816 Male, age 51, unknown 55.9
2224 Female, age 72, unknown 49.1
Red nucleus
nTPM: 133.8
1904 Male, age 53, unknown 160.9
1865 Male, age 51, unknown 156.9
1821 Female, age 72, unknown 156.1
2785 Male, age 18, unknown 144.9
2227 Male, age 72, unknown 142.0
2769 Male, age 72, unknown 140.2
2823 Male, age 76, right hemisphere 132.5
2503 Female, age 72, unknown 131.4
1954 Female, age 42, unknown 125.7
2588 Male, age 74, left hemisphere 125.5
2584 Male, age 75, left hemisphere 103.1
2725 Female, age 75, unknown 86.9
Substantia nigra
nTPM: 79.8
2583 Male, age 75, right hemisphere 107.8
2409 Female, age 72, unknown 101.1
2590 Female, age 75, unknown 94.9
1889 Female, age 72, unknown 90.1
1851 Male, age 51, unknown 86.1
2241 Male, age 72, unknown 74.8
2665 Male, age 74, both hemispheres 65.3
2699 Male, age 18, unknown 62.9
1941 Male, age 53, unknown 60.8
1916 Female, age 42, unknown 53.8
Superior colliculus
nTPM: 84.8
1913 Female, age 42, unknown 128.6
1995 Male, age 72, unknown 112.2
2587 Male, age 74, left hemisphere 104.9
2668 Female, age 75, unknown 95.7
1839 Male, age 51, unknown 79.9
1895 Male, age 76, right hemisphere 77.3
1796 Male, age 53, unknown 69.7
2261 Male, age 18, unknown 67.2
2087 Female, age 72, unknown 62.7
2664 Male, age 75, both hemispheres 49.6
Ventral tegmental area
nTPM: 84.9
2223 Female, age 72, unknown 122.9
2410 Female, age 72, unknown 111.0
2021 Male, age 53, unknown 73.4
1942 Male, age 51, unknown 72.0
2218 Male, age 76, both hemispheres 65.1
1915 Female, age 42, unknown 64.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 75.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 75.1
Samples: 139

Max nTPM: 231.5
Min nTPM: 29.6
Std nTPM: 33.0
Median nTPM: 68.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 231.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 206.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 186.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 177.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 156.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 142.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 139.3
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 136.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 135.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 129.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 129.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 508.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 508.9
FF:10158-103A5 76 years, female 508.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 109.2
Pig sample Sample description nTPM
Midbrain
nTPM: 109.2
Samples: 4

Max nTPM: 141.1
Min nTPM: 81.1
Sample A Female 127.7
Sample B Female 81.1
Sample C Male 141.1
Sample D Male 86.9
Periaqueductal gray
nTPM: 64.3
Samples: 3

Max nTPM: 74.1
Min nTPM: 55.5
Sample B Female 74.1
Sample C Male 55.5
Sample D Male 63.4
Substantia nigra
nTPM: 84.2
Samples: 4

Max nTPM: 114.0
Min nTPM: 61.3
Sample A Female 85.1
Sample B Female 61.3
Sample C Male 76.5
Sample D Male 114.0
Superior colliculi
nTPM: 94.1
Samples: 4

Max nTPM: 116.4
Min nTPM: 68.8
Sample A Female 88.5
Sample B Female 68.8
Sample C Male 116.4
Sample D Male 102.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 80.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 80.7
Samples: 4

Max nTPM: 91.7
Min nTPM: 67.1
Sample A Male 67.1
Sample B Male 81.3
Sample C Female 91.7
Sample D Female 82.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.1
69288327 Antisense, RP_050331_04_E09, Mouse strain C57BL/6J (56 days, male) 9.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.