MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:155.4 nTPM
HPA:155.4 nTPM
GTEx:178.0 nTPM
FANTOM5:93.8 Scaled Tags Per Million
Pig:24.0 nTPM
Mouse:147.3 nTPM
Allen mouse:3.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 155.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 149.1
2019 Male, age 18, unknown 160.4
2411 Female, age 72, unknown 155.0
1870 Female, age 42, unknown 152.2
1827 Male, age 72, unknown 149.5
2586 Male, age 75, left hemisphere 147.6
1833 Male, age 53, unknown 147.4
2219 Male, age 76, both hemispheres 145.3
1830 Male, age 51, unknown 145.2
2666 Male, age 74, left hemisphere 145.1
2828 Female, age 72, unknown 143.7
Dorsal raphe nucleus
nTPM: 155.4
2298 Female, age 72, unknown 166.0
1828 Male, age 53, unknown 155.1
2750 Male, age 76, both hemispheres 153.4
2047 Male, age 72, unknown 152.2
2016 Female, age 72, unknown 150.1
Inferior colliculus
nTPM: 149.9
2097 Female, age 72, unknown 158.0
1890 Male, age 53, unknown 150.4
1848 Female, age 42, unknown 147.4
2849 Male, age 72, unknown 143.8
Median raphe nucleus
nTPM: 153.2
2220 Male, age 76, midline 153.2
Pedunculopontine tegmental nucleus
nTPM: 154.9
2334 Male, age 80, both hemispheres 157.9
1921 Female, age 85, both hemispheres 154.1
2338 Male, age 61, both hemispheres 152.7
Periaquaductal grey, anterior
nTPM: 148.5
1947 Male, age 18, unknown 148.9
1795 Male, age 51, unknown 148.3
2502 Female, age 75, unknown 148.2
Periaquaductal grey, dorsal
nTPM: 149.3
2850 Male, age 76, both hemispheres 154.4
2464 Female, age 72, unknown 149.3
1840 Male, age 53, unknown 147.3
1831 Male, age 72, unknown 146.1
Periaquaductal grey, lateral
nTPM: 147.0
2272 Male, age 74, both hemispheres 149.7
2140 Male, age 76, both hemispheres 146.1
2053 Male, age 18, unknown 145.2
Pretectal area
nTPM: 153.6
1817 Female, age 42, unknown 160.7
2007 Male, age 72, unknown 160.0
1944 Female, age 72, unknown 158.3
1816 Male, age 51, unknown 157.7
2667 Female, age 75, unknown 155.2
2273 Male, age 74, both hemispheres 155.1
2224 Female, age 72, unknown 154.6
1815 Male, age 53, unknown 154.4
2316 Male, age 76, right hemisphere 149.5
2825 Male, age 18, unknown 144.1
2407 Male, age 75, both hemispheres 139.7
Red nucleus
nTPM: 152.8
1821 Female, age 72, unknown 167.1
1865 Male, age 51, unknown 155.7
2503 Female, age 72, unknown 154.9
1904 Male, age 53, unknown 154.4
2785 Male, age 18, unknown 154.4
2725 Female, age 75, unknown 154.0
2769 Male, age 72, unknown 153.4
1954 Female, age 42, unknown 152.6
2227 Male, age 72, unknown 152.5
2823 Male, age 76, right hemisphere 151.7
2588 Male, age 74, left hemisphere 141.7
2584 Male, age 75, left hemisphere 140.9
Substantia nigra
nTPM: 153.5
1889 Female, age 72, unknown 161.5
1851 Male, age 51, unknown 159.1
1916 Female, age 42, unknown 158.7
2241 Male, age 72, unknown 158.3
1941 Male, age 53, unknown 154.0
2409 Female, age 72, unknown 150.2
2699 Male, age 18, unknown 149.9
2665 Male, age 74, both hemispheres 149.1
2590 Female, age 75, unknown 148.1
2583 Male, age 75, right hemisphere 146.4
Superior colliculus
nTPM: 150.0
1796 Male, age 53, unknown 152.9
1913 Female, age 42, unknown 152.7
2587 Male, age 74, left hemisphere 152.5
2261 Male, age 18, unknown 151.5
2668 Female, age 75, unknown 151.3
1895 Male, age 76, right hemisphere 150.9
2087 Female, age 72, unknown 150.2
1995 Male, age 72, unknown 149.4
1839 Male, age 51, unknown 146.7
2664 Male, age 75, both hemispheres 142.2
Ventral tegmental area
nTPM: 154.9
2410 Female, age 72, unknown 162.9
1915 Female, age 42, unknown 157.9
2218 Male, age 76, both hemispheres 155.2
2223 Female, age 72, unknown 154.2
1942 Male, age 51, unknown 149.6
2021 Male, age 53, unknown 149.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 178.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 178.0
Samples: 139

Max nTPM: 287.8
Min nTPM: 111.6
Std nTPM: 32.6
Median nTPM: 173.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 287.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 280.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 269.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 269.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 266.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 254.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 250.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 242.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 242.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 237.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 235.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.8
FF:10158-103A5 76 years, female 93.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.0
Pig sample Sample description nTPM
Midbrain
nTPM: 22.8
Samples: 4

Max nTPM: 30.1
Min nTPM: 18.6
Sample A Female 30.1
Sample B Female 22.7
Sample C Male 19.9
Sample D Male 18.6
Periaqueductal gray
nTPM: 20.0
Samples: 3

Max nTPM: 20.3
Min nTPM: 19.6
Sample B Female 20.0
Sample C Male 19.6
Sample D Male 20.3
Substantia nigra
nTPM: 21.3
Samples: 4

Max nTPM: 29.6
Min nTPM: 18.3
Sample A Female 29.6
Sample B Female 18.9
Sample C Male 18.4
Sample D Male 18.3
Superior colliculi
nTPM: 24.0
Samples: 4

Max nTPM: 28.5
Min nTPM: 21.3
Sample A Female 28.5
Sample B Female 24.5
Sample C Male 21.3
Sample D Male 21.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 147.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 147.3
Samples: 4

Max nTPM: 151.3
Min nTPM: 144.1
Sample A Male 151.3
Sample B Male 146.3
Sample C Female 144.1
Sample D Female 147.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
69134163 Antisense, RP_050321_02_D10, Mouse strain C57BL/6J (56 days, male) 3.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.