MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:20.1 nTPM
HPA:20.1 nTPM
GTEx:24.4 nTPM
FANTOM5:63.6 Scaled Tags Per Million
Pig:55.6 nTPM
Mouse:97.8 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.5
2411 Female, age 72, unknown 20.7
2019 Male, age 18, unknown 20.1
1870 Female, age 42, unknown 18.2
1827 Male, age 72, unknown 18.0
2666 Male, age 74, left hemisphere 17.0
2219 Male, age 76, both hemispheres 16.7
1830 Male, age 51, unknown 16.6
2586 Male, age 75, left hemisphere 16.3
2828 Female, age 72, unknown 16.1
1833 Male, age 53, unknown 15.7
Dorsal raphe nucleus
nTPM: 17.9
2298 Female, age 72, unknown 19.8
1828 Male, age 53, unknown 18.6
2750 Male, age 76, both hemispheres 18.5
2047 Male, age 72, unknown 17.8
2016 Female, age 72, unknown 15.1
Inferior colliculus
nTPM: 16.8
2097 Female, age 72, unknown 18.3
1848 Female, age 42, unknown 17.4
1890 Male, age 53, unknown 16.1
2849 Male, age 72, unknown 15.2
Median raphe nucleus
nTPM: 19.6
2220 Male, age 76, midline 19.6
Pedunculopontine tegmental nucleus
nTPM: 17.8
2334 Male, age 80, both hemispheres 18.9
1921 Female, age 85, both hemispheres 18.1
2338 Male, age 61, both hemispheres 16.6
Periaquaductal grey, anterior
nTPM: 18.1
2502 Female, age 75, unknown 19.8
1947 Male, age 18, unknown 18.0
1795 Male, age 51, unknown 16.6
Periaquaductal grey, dorsal
nTPM: 15.2
1840 Male, age 53, unknown 17.2
2464 Female, age 72, unknown 14.9
2850 Male, age 76, both hemispheres 14.4
1831 Male, age 72, unknown 14.2
Periaquaductal grey, lateral
nTPM: 15.3
2272 Male, age 74, both hemispheres 17.1
2053 Male, age 18, unknown 15.4
2140 Male, age 76, both hemispheres 13.5
Pretectal area
nTPM: 17.5
2007 Male, age 72, unknown 20.3
1817 Female, age 42, unknown 19.7
1816 Male, age 51, unknown 19.0
1944 Female, age 72, unknown 18.3
2273 Male, age 74, both hemispheres 17.4
2407 Male, age 75, both hemispheres 17.3
2667 Female, age 75, unknown 17.0
1815 Male, age 53, unknown 16.6
2224 Female, age 72, unknown 16.5
2825 Male, age 18, unknown 15.8
2316 Male, age 76, right hemisphere 14.2
Red nucleus
nTPM: 17.1
1821 Female, age 72, unknown 21.6
2725 Female, age 75, unknown 18.4
2584 Male, age 75, left hemisphere 17.8
2769 Male, age 72, unknown 17.6
2227 Male, age 72, unknown 17.5
2785 Male, age 18, unknown 17.4
1904 Male, age 53, unknown 16.5
1954 Female, age 42, unknown 16.3
2588 Male, age 74, left hemisphere 16.0
1865 Male, age 51, unknown 15.9
2503 Female, age 72, unknown 15.6
2823 Male, age 76, right hemisphere 15.0
Substantia nigra
nTPM: 20.1
1941 Male, age 53, unknown 25.3
1916 Female, age 42, unknown 24.2
2241 Male, age 72, unknown 23.5
1851 Male, age 51, unknown 21.8
1889 Female, age 72, unknown 20.2
2409 Female, age 72, unknown 18.7
2699 Male, age 18, unknown 17.7
2583 Male, age 75, right hemisphere 17.5
2665 Male, age 74, both hemispheres 16.7
2590 Female, age 75, unknown 15.2
Superior colliculus
nTPM: 16.6
2668 Female, age 75, unknown 18.4
2587 Male, age 74, left hemisphere 18.1
1895 Male, age 76, right hemisphere 17.3
1839 Male, age 51, unknown 17.2
2087 Female, age 72, unknown 16.7
2261 Male, age 18, unknown 16.7
1796 Male, age 53, unknown 16.4
2664 Male, age 75, both hemispheres 16.1
1913 Female, age 42, unknown 15.2
1995 Male, age 72, unknown 13.6
Ventral tegmental area
nTPM: 18.8
2410 Female, age 72, unknown 21.5
1915 Female, age 42, unknown 19.6
2218 Male, age 76, both hemispheres 19.0
2223 Female, age 72, unknown 18.5
1942 Male, age 51, unknown 18.1
2021 Male, age 53, unknown 15.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.4
Samples: 139

Max nTPM: 86.2
Min nTPM: 14.4
Std nTPM: 9.3
Median nTPM: 22.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 86.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 59.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 48.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 47.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 45.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 42.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 40.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 40.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 38.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 38.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 36.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 63.6
FF:10158-103A5 76 years, female 63.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 55.6
Pig sample Sample description nTPM
Midbrain
nTPM: 49.4
Samples: 4

Max nTPM: 72.2
Min nTPM: 30.8
Sample A Female 30.8
Sample B Female 38.3
Sample C Male 72.2
Sample D Male 56.4
Periaqueductal gray
nTPM: 37.1
Samples: 3

Max nTPM: 45.5
Min nTPM: 32.0
Sample B Female 33.9
Sample C Male 45.5
Sample D Male 32.0
Substantia nigra
nTPM: 41.5
Samples: 4

Max nTPM: 59.9
Min nTPM: 24.0
Sample A Female 59.9
Sample B Female 31.0
Sample C Male 51.1
Sample D Male 24.0
Superior colliculi
nTPM: 55.6
Samples: 4

Max nTPM: 68.5
Min nTPM: 37.8
Sample A Female 62.8
Sample B Female 37.8
Sample C Male 68.5
Sample D Male 53.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 97.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 97.8
Samples: 4

Max nTPM: 101.4
Min nTPM: 91.3
Sample A Male 91.3
Sample B Male 98.8
Sample C Female 101.4
Sample D Female 99.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
74822941 Antisense, RP_060321_01_B02, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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