MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:27.0 nTPM
HPA:27.0 nTPM
GTEx:37.6 nTPM
FANTOM5:206.3 Scaled Tags Per Million
Pig:66.7 nTPM
Mouse:40.7 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.7
1830 Male, age 51, unknown 25.3
2219 Male, age 76, both hemispheres 25.0
1870 Female, age 42, unknown 24.5
2019 Male, age 18, unknown 22.4
2411 Female, age 72, unknown 22.1
1833 Male, age 53, unknown 21.2
2828 Female, age 72, unknown 20.2
1827 Male, age 72, unknown 20.0
2666 Male, age 74, left hemisphere 17.2
2586 Male, age 75, left hemisphere 9.2
Dorsal raphe nucleus
nTPM: 23.0
2016 Female, age 72, unknown 25.4
2750 Male, age 76, both hemispheres 24.8
1828 Male, age 53, unknown 23.0
2047 Male, age 72, unknown 21.5
2298 Female, age 72, unknown 20.2
Inferior colliculus
nTPM: 24.4
2097 Female, age 72, unknown 27.5
1848 Female, age 42, unknown 26.1
2849 Male, age 72, unknown 24.5
1890 Male, age 53, unknown 19.3
Median raphe nucleus
nTPM: 24.5
2220 Male, age 76, midline 24.5
Pedunculopontine tegmental nucleus
nTPM: 27.0
2338 Male, age 61, both hemispheres 36.6
2334 Male, age 80, both hemispheres 22.7
1921 Female, age 85, both hemispheres 21.6
Periaquaductal grey, anterior
nTPM: 16.8
1947 Male, age 18, unknown 20.6
2502 Female, age 75, unknown 15.4
1795 Male, age 51, unknown 14.3
Periaquaductal grey, dorsal
nTPM: 23.2
2850 Male, age 76, both hemispheres 31.4
1831 Male, age 72, unknown 23.4
2464 Female, age 72, unknown 20.0
1840 Male, age 53, unknown 17.9
Periaquaductal grey, lateral
nTPM: 22.9
2140 Male, age 76, both hemispheres 27.3
2272 Male, age 74, both hemispheres 25.9
2053 Male, age 18, unknown 15.5
Pretectal area
nTPM: 20.9
2316 Male, age 76, right hemisphere 25.0
1817 Female, age 42, unknown 24.7
1815 Male, age 53, unknown 24.5
2273 Male, age 74, both hemispheres 24.2
1944 Female, age 72, unknown 24.1
2224 Female, age 72, unknown 23.6
2667 Female, age 75, unknown 20.1
2825 Male, age 18, unknown 18.9
1816 Male, age 51, unknown 17.6
2007 Male, age 72, unknown 17.3
2407 Male, age 75, both hemispheres 10.3
Red nucleus
nTPM: 22.7
2503 Female, age 72, unknown 27.9
2823 Male, age 76, right hemisphere 25.5
1865 Male, age 51, unknown 25.2
1821 Female, age 72, unknown 24.9
2588 Male, age 74, left hemisphere 23.4
2725 Female, age 75, unknown 23.4
1904 Male, age 53, unknown 22.8
2785 Male, age 18, unknown 22.8
2769 Male, age 72, unknown 22.0
2227 Male, age 72, unknown 21.7
1954 Female, age 42, unknown 21.0
2584 Male, age 75, left hemisphere 11.5
Substantia nigra
nTPM: 18.9
2590 Female, age 75, unknown 25.3
2665 Male, age 74, both hemispheres 23.5
1941 Male, age 53, unknown 23.3
2699 Male, age 18, unknown 22.4
2241 Male, age 72, unknown 18.2
1889 Female, age 72, unknown 17.8
1851 Male, age 51, unknown 17.7
1916 Female, age 42, unknown 15.8
2409 Female, age 72, unknown 13.3
2583 Male, age 75, right hemisphere 11.8
Superior colliculus
nTPM: 21.5
1913 Female, age 42, unknown 30.6
1895 Male, age 76, right hemisphere 26.9
2587 Male, age 74, left hemisphere 26.3
1995 Male, age 72, unknown 25.8
1839 Male, age 51, unknown 25.2
2087 Female, age 72, unknown 22.1
1796 Male, age 53, unknown 19.5
2261 Male, age 18, unknown 18.3
2668 Female, age 75, unknown 15.2
2664 Male, age 75, both hemispheres 4.8
Ventral tegmental area
nTPM: 23.2
2218 Male, age 76, both hemispheres 26.2
2223 Female, age 72, unknown 25.9
2410 Female, age 72, unknown 24.7
2021 Male, age 53, unknown 23.1
1915 Female, age 42, unknown 21.2
1942 Male, age 51, unknown 17.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.6
Samples: 139

Max nTPM: 64.2
Min nTPM: 20.9
Std nTPM: 10.8
Median nTPM: 35.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 64.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 63.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 62.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 61.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 60.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 59.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 59.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 59.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 59.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 57.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 54.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 206.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 206.3
FF:10158-103A5 76 years, female 206.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 66.7
Pig sample Sample description nTPM
Midbrain
nTPM: 64.6
Samples: 4

Max nTPM: 95.5
Min nTPM: 44.5
Sample A Female 95.5
Sample B Female 54.8
Sample C Male 63.4
Sample D Male 44.5
Periaqueductal gray
nTPM: 48.6
Samples: 3

Max nTPM: 50.9
Min nTPM: 46.9
Sample B Female 46.9
Sample C Male 50.9
Sample D Male 48.0
Substantia nigra
nTPM: 64.4
Samples: 4

Max nTPM: 72.4
Min nTPM: 51.9
Sample A Female 69.1
Sample B Female 72.4
Sample C Male 51.9
Sample D Male 64.3
Superior colliculi
nTPM: 66.7
Samples: 4

Max nTPM: 86.3
Min nTPM: 54.3
Sample A Female 61.8
Sample B Female 86.3
Sample C Male 64.5
Sample D Male 54.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 40.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.7
Samples: 4

Max nTPM: 42.0
Min nTPM: 37.8
Sample A Male 37.8
Sample B Male 42.0
Sample C Female 41.6
Sample D Female 41.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
69735431 Antisense, RP_050503_02_G08, Mouse strain C57BL/6J (56 days, male) 1.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.