MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:745.6 nTPM
HPA:745.6 nTPM
GTEx:853.4 nTPM
FANTOM5:31.3 Scaled Tags Per Million
Mouse:294.4 nTPM
Allen mouse:4.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 745.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 726.9
1870 Female, age 42, unknown 745.9
2586 Male, age 75, left hemisphere 735.2
2219 Male, age 76, both hemispheres 729.1
2666 Male, age 74, left hemisphere 728.5
1833 Male, age 53, unknown 727.9
2828 Female, age 72, unknown 725.5
2019 Male, age 18, unknown 724.2
1830 Male, age 51, unknown 723.5
2411 Female, age 72, unknown 716.9
1827 Male, age 72, unknown 712.5
Dorsal raphe nucleus
nTPM: 731.4
2298 Female, age 72, unknown 744.9
2016 Female, age 72, unknown 739.0
2750 Male, age 76, both hemispheres 733.3
1828 Male, age 53, unknown 727.8
2047 Male, age 72, unknown 711.8
Inferior colliculus
nTPM: 729.5
1890 Male, age 53, unknown 738.9
2849 Male, age 72, unknown 729.5
2097 Female, age 72, unknown 725.8
1848 Female, age 42, unknown 723.7
Median raphe nucleus
nTPM: 732.0
2220 Male, age 76, midline 732.0
Pedunculopontine tegmental nucleus
nTPM: 745.6
2338 Male, age 61, both hemispheres 770.3
2334 Male, age 80, both hemispheres 745.1
1921 Female, age 85, both hemispheres 721.4
Periaquaductal grey, anterior
nTPM: 730.5
2502 Female, age 75, unknown 744.4
1947 Male, age 18, unknown 724.6
1795 Male, age 51, unknown 722.5
Periaquaductal grey, dorsal
nTPM: 728.7
2850 Male, age 76, both hemispheres 737.7
1831 Male, age 72, unknown 732.1
1840 Male, age 53, unknown 730.7
2464 Female, age 72, unknown 714.3
Periaquaductal grey, lateral
nTPM: 725.7
2053 Male, age 18, unknown 733.7
2140 Male, age 76, both hemispheres 727.2
2272 Male, age 74, both hemispheres 716.2
Pretectal area
nTPM: 725.4
2224 Female, age 72, unknown 741.9
2316 Male, age 76, right hemisphere 735.8
2825 Male, age 18, unknown 728.4
1815 Male, age 53, unknown 727.8
1817 Female, age 42, unknown 726.9
1816 Male, age 51, unknown 721.9
2667 Female, age 75, unknown 720.9
1944 Female, age 72, unknown 719.9
2007 Male, age 72, unknown 719.8
2407 Male, age 75, both hemispheres 718.2
2273 Male, age 74, both hemispheres 718.1
Red nucleus
nTPM: 738.4
2503 Female, age 72, unknown 766.0
1865 Male, age 51, unknown 756.9
1904 Male, age 53, unknown 744.1
1821 Female, age 72, unknown 743.6
2725 Female, age 75, unknown 741.0
2769 Male, age 72, unknown 739.0
2227 Male, age 72, unknown 736.9
1954 Female, age 42, unknown 732.0
2785 Male, age 18, unknown 730.4
2584 Male, age 75, left hemisphere 725.1
2588 Male, age 74, left hemisphere 723.3
2823 Male, age 76, right hemisphere 722.0
Substantia nigra
nTPM: 738.9
2241 Male, age 72, unknown 769.5
2699 Male, age 18, unknown 759.6
1851 Male, age 51, unknown 747.3
2409 Female, age 72, unknown 745.3
2665 Male, age 74, both hemispheres 742.8
1916 Female, age 42, unknown 732.8
2590 Female, age 75, unknown 730.0
1889 Female, age 72, unknown 729.2
1941 Male, age 53, unknown 716.7
2583 Male, age 75, right hemisphere 715.9
Superior colliculus
nTPM: 730.4
1995 Male, age 72, unknown 744.7
1913 Female, age 42, unknown 744.5
2587 Male, age 74, left hemisphere 738.6
1796 Male, age 53, unknown 734.7
1895 Male, age 76, right hemisphere 729.0
1839 Male, age 51, unknown 726.6
2664 Male, age 75, both hemispheres 726.2
2668 Female, age 75, unknown 725.1
2087 Female, age 72, unknown 719.0
2261 Male, age 18, unknown 715.8
Ventral tegmental area
nTPM: 735.6
2223 Female, age 72, unknown 750.0
1915 Female, age 42, unknown 746.7
2021 Male, age 53, unknown 732.5
2218 Male, age 76, both hemispheres 731.6
1942 Male, age 51, unknown 728.2
2410 Female, age 72, unknown 724.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 853.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 853.4
Samples: 139

Max nTPM: 2287.5
Min nTPM: 278.2
Std nTPM: 346.6
Median nTPM: 774.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2287.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2186.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2109.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1893.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1666.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1554.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1545.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1438.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1436.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1417.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1401.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.3
FF:10158-103A5 76 years, female 31.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 294.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 294.4
Samples: 4

Max nTPM: 318.7
Min nTPM: 273.1
Sample A Male 318.7
Sample B Male 291.0
Sample C Female 273.1
Sample D Female 294.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.4
68862012 Antisense, RP_050301_01_C11, Mouse strain C57BL/6J (56 days, male) 4.7
74357560 Antisense, RP_051214_01_B11, Mouse strain C57BL/6J (56 days, male) 4.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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