MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:55.6 nTPM
HPA:55.6 nTPM
GTEx:55.5 nTPM
FANTOM5:213.5 Scaled Tags Per Million
Pig:104.9 nTPM
Mouse:180.2 nTPM
Allen mouse:9.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.4
2019 Male, age 18, unknown 62.4
1827 Male, age 72, unknown 50.9
2219 Male, age 76, both hemispheres 50.1
1870 Female, age 42, unknown 49.3
2411 Female, age 72, unknown 49.3
1833 Male, age 53, unknown 47.5
2666 Male, age 74, left hemisphere 47.1
1830 Male, age 51, unknown 46.8
2828 Female, age 72, unknown 45.8
2586 Male, age 75, left hemisphere 45.3
Dorsal raphe nucleus
nTPM: 48.8
1828 Male, age 53, unknown 51.2
2298 Female, age 72, unknown 50.7
2750 Male, age 76, both hemispheres 49.7
2047 Male, age 72, unknown 47.5
2016 Female, age 72, unknown 44.9
Inferior colliculus
nTPM: 51.3
2097 Female, age 72, unknown 55.1
1890 Male, age 53, unknown 53.4
1848 Female, age 42, unknown 48.6
2849 Male, age 72, unknown 48.1
Median raphe nucleus
nTPM: 55.4
2220 Male, age 76, midline 55.4
Pedunculopontine tegmental nucleus
nTPM: 52.7
2338 Male, age 61, both hemispheres 55.3
2334 Male, age 80, both hemispheres 52.1
1921 Female, age 85, both hemispheres 50.7
Periaquaductal grey, anterior
nTPM: 47.1
2502 Female, age 75, unknown 48.3
1947 Male, age 18, unknown 47.5
1795 Male, age 51, unknown 45.6
Periaquaductal grey, dorsal
nTPM: 48.5
2850 Male, age 76, both hemispheres 55.5
1831 Male, age 72, unknown 48.4
2464 Female, age 72, unknown 45.2
1840 Male, age 53, unknown 44.9
Periaquaductal grey, lateral
nTPM: 45.6
2272 Male, age 74, both hemispheres 49.2
2140 Male, age 76, both hemispheres 45.4
2053 Male, age 18, unknown 42.3
Pretectal area
nTPM: 55.6
1817 Female, age 42, unknown 67.6
2007 Male, age 72, unknown 66.1
1944 Female, age 72, unknown 65.8
1816 Male, age 51, unknown 65.1
1815 Male, age 53, unknown 58.6
2667 Female, age 75, unknown 55.2
2273 Male, age 74, both hemispheres 51.3
2224 Female, age 72, unknown 46.5
2316 Male, age 76, right hemisphere 45.5
2407 Male, age 75, both hemispheres 45.2
2825 Male, age 18, unknown 44.9
Red nucleus
nTPM: 51.2
1821 Female, age 72, unknown 59.6
2785 Male, age 18, unknown 56.7
2725 Female, age 75, unknown 53.7
1954 Female, age 42, unknown 52.5
2503 Female, age 72, unknown 51.5
1865 Male, age 51, unknown 51.4
1904 Male, age 53, unknown 51.4
2823 Male, age 76, right hemisphere 50.9
2769 Male, age 72, unknown 48.0
2227 Male, age 72, unknown 46.8
2584 Male, age 75, left hemisphere 46.3
2588 Male, age 74, left hemisphere 46.0
Substantia nigra
nTPM: 55.2
1889 Female, age 72, unknown 62.6
1916 Female, age 42, unknown 61.0
2241 Male, age 72, unknown 58.1
1941 Male, age 53, unknown 57.9
2409 Female, age 72, unknown 56.7
1851 Male, age 51, unknown 55.8
2665 Male, age 74, both hemispheres 51.9
2699 Male, age 18, unknown 51.3
2590 Female, age 75, unknown 49.9
2583 Male, age 75, right hemisphere 47.0
Superior colliculus
nTPM: 50.0
2087 Female, age 72, unknown 58.7
1895 Male, age 76, right hemisphere 53.4
2587 Male, age 74, left hemisphere 50.6
2261 Male, age 18, unknown 50.1
2668 Female, age 75, unknown 50.0
1913 Female, age 42, unknown 49.9
1796 Male, age 53, unknown 49.6
1995 Male, age 72, unknown 48.2
1839 Male, age 51, unknown 46.3
2664 Male, age 75, both hemispheres 43.7
Ventral tegmental area
nTPM: 49.7
2410 Female, age 72, unknown 53.2
2218 Male, age 76, both hemispheres 52.4
1915 Female, age 42, unknown 52.1
1942 Male, age 51, unknown 48.4
2223 Female, age 72, unknown 47.4
2021 Male, age 53, unknown 44.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 55.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.5
Samples: 139

Max nTPM: 115.0
Min nTPM: 31.5
Std nTPM: 12.0
Median nTPM: 53.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 115.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 107.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 98.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 90.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 83.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 77.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 74.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 73.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 71.7
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 71.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 70.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 213.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 213.5
FF:10158-103A5 76 years, female 213.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 104.9
Pig sample Sample description nTPM
Midbrain
nTPM: 96.9
Samples: 4

Max nTPM: 106.9
Min nTPM: 86.3
Sample A Female 86.3
Sample B Female 89.1
Sample C Male 106.9
Sample D Male 105.3
Periaqueductal gray
nTPM: 79.1
Samples: 3

Max nTPM: 87.0
Min nTPM: 73.5
Sample B Female 73.5
Sample C Male 87.0
Sample D Male 76.9
Substantia nigra
nTPM: 89.9
Samples: 4

Max nTPM: 112.0
Min nTPM: 70.8
Sample A Female 112.0
Sample B Female 73.9
Sample C Male 102.9
Sample D Male 70.8
Superior colliculi
nTPM: 104.9
Samples: 4

Max nTPM: 127.6
Min nTPM: 72.4
Sample A Female 112.0
Sample B Female 72.4
Sample C Male 127.6
Sample D Male 107.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 180.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 180.2
Samples: 4

Max nTPM: 194.3
Min nTPM: 164.5
Sample A Male 164.5
Sample B Male 182.1
Sample C Female 194.3
Sample D Female 179.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.3
68667829 Antisense, RP_050201_02_H09, Mouse strain C57BL/6J (56 days, male) 9.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.