BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:41.5 nTPM
HPA:41.5 nTPM
GTEx:61.7 nTPM
FANTOM5:81.0 Scaled Tags Per Million
Pig:19.0 nTPM
Mouse:97.5 nTPM
Allen mouse:6.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 41.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 36.2
2846 Female, age 79, unknown 53.6
2290 Female, age 72, unknown 43.2
1857 Female, age 85, left hemisphere 39.5
2289 Male, age 61, right hemisphere 37.8
1781 Male, age 74, unknown 35.0
1854 Male, age 80, left hemisphere 32.5
2288 Male, age 75, left hemisphere 28.0
2481 Female, age 94, left hemisphere 19.8
Claustrum
nTPM: 32.9
2284 Female, age 91, both hemispheres 41.9
2645 Female, age 72, unknown 37.5
2568 Male, age 61, both hemispheres 36.7
2198 Male, age 80, both hemispheres 34.0
1956 Male, age 74, unknown 31.9
2196 Female, age 79, unknown 30.8
2491 Male, age 75, both hemispheres 28.9
2392 Female, age 94, both hemispheres 27.8
2292 Female, age 85, both hemispheres 26.9
Globus pallidus, externus
nTPM: 10.0
2646 Male, age 61, right hemisphere 13.1
2395 Male, age 75, both hemispheres 12.7
1996 Male, age 80, right hemisphere 8.5
2772 Female, age 79, unknown 8.4
2567 Female, age 72, unknown 7.1
Globus pallidus, internus
nTPM: 8.6
2483 Female, age 94, right hemisphere 14.2
2287 Male, age 75, right hemisphere 11.3
1818 Male, age 74, unknown 8.1
2037 Male, age 80, right hemisphere 7.8
2566 Female, age 72, unknown 6.9
2111 Female, age 85, right hemisphere 6.0
2778 Female, age 91, both hemispheres 5.7
Nucleus accumbens
nTPM: 31.4
1856 Female, age 91, right hemisphere 46.7
1783 Male, age 74, unknown 40.7
2824 Male, age 61, right hemisphere 36.9
2698 Female, age 72, unknown 35.3
1806 Female, age 85, left hemisphere 34.1
2286 Male, age 75, left hemisphere 24.4
2391 Female, age 94, left hemisphere 18.0
2732 Male, age 80, right hemisphere 15.2
Nucleus basalis of Meynert
nTPM: 26.5
2393 Male, age 80, right hemisphere 35.4
2484 Female, age 94, left hemisphere 34.0
2821 Male, age 75, both hemispheres 21.4
2569 Male, age 61, both hemispheres 15.2
Nucleus of the diagonal band
nTPM: 23.6
2029 Male, age 61, right hemisphere 27.1
1812 Female, age 91, both hemispheres 26.6
2195 Female, age 85, both hemispheres 24.6
2775 Male, age 80, right hemisphere 23.5
1979 Male, age 74, unknown 16.3
Olfactory tubercle
nTPM: 27.9
1998 Female, age 91, both hemispheres 34.8
2856 Male, age 75, right hemisphere 27.0
1846 Male, age 80, right hemisphere 25.4
2487 Female, age 94, left hemisphere 24.6
Putamen
nTPM: 41.5
1829 Male, age 74, unknown 56.3
2466 Female, age 79, unknown 52.4
1838 Male, age 80, right hemisphere 47.5
2489 Female, age 72, unknown 41.0
1937 Female, age 91, right hemisphere 40.7
2647 Male, age 75, left hemisphere 27.5
2482 Female, age 94, left hemisphere 24.9
Septal nuclei
nTPM: 20.8
2031 Female, age 72, unknown 28.0
1960 Male, age 74, unknown 25.6
2629 Female, age 94, right hemisphere 24.8
2009 Female, age 91, both hemispheres 24.1
2059 Female, age 85, both hemispheres 17.5
2199 Male, age 80, right hemisphere 15.0
2394 Male, age 61, left hemisphere 10.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 61.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 58.5
Samples: 246

Max nTPM: 138.1
Min nTPM: 13.1
Std nTPM: 27.9
Median nTPM: 56.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 138.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 132.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 129.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 128.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 126.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 126.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 122.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 121.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 118.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 113.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 105.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 50.9
Samples: 246

Max nTPM: 127.9
Min nTPM: 7.4
Std nTPM: 22.4
Median nTPM: 52.5
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 127.9
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 104.9
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 99.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 98.1
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 97.5
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 97.4
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 95.8
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 92.5
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 90.5
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 90.5
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 90.1
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Brain - Putamen (basal ganglia)
Average nTPM: 61.7
Samples: 205

Max nTPM: 166.5
Min nTPM: 9.6
Std nTPM: 31.4
Median nTPM: 61.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 166.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 132.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 130.7
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 129.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 124.6
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 121.9
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 120.8
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 120.1
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 118.6
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 118.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 113.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 81.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 77.3
FF:10164-103B2 76 years, female 77.3
Globus pallidus
Scaled Tags Per Million: 44.0
FF:10175-103C4 60 years, female 56.0
FF:10161-103A8 76 years, female 31.9
Nucleus accumbens
Scaled Tags Per Million: 66.9
FF:10037-101F1 23-56 years, mixed 66.9
Putamen
Scaled Tags Per Million: 81.0
FF:10176-103C5 60 years, female 81.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 19.0
Pig sample Sample description nTPM
Caudate
nTPM: 16.4
Samples: 4

Max nTPM: 17.7
Min nTPM: 14.9
Sample A Female 15.3
Sample B Female 17.7
Sample C Male 17.7
Sample D Male 14.9
Putamen
nTPM: 19.0
Samples: 4

Max nTPM: 21.7
Min nTPM: 16.7
Sample A Female 20.1
Sample B Female 17.3
Sample C Male 16.7
Sample D Male 21.7
Septum
nTPM: 16.5
Samples: 4

Max nTPM: 21.2
Min nTPM: 10.8
Sample A Female 17.5
Sample B Female 16.6
Sample C Male 10.8
Sample D Male 21.2
Ventral pallidum
nTPM: 17.7
Samples: 4

Max nTPM: 19.9
Min nTPM: 15.1
Sample A Female 15.1
Sample B Female 19.6
Sample C Male 16.0
Sample D Male 19.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 97.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 97.5
Samples: 4

Max nTPM: 102.7
Min nTPM: 95.5
Sample A Male 95.5
Sample B Male 102.7
Sample C Female 96.3
Sample D Female 95.5
Septum
nTPM: 30.2
Samples: 4

Max nTPM: 34.1
Min nTPM: 28.4
Sample A Male 34.1
Sample B Male 28.4
Sample C Female 28.4
Sample D Female 30.0
Ventral forebrain
nTPM: 75.3
Samples: 4

Max nTPM: 85.2
Min nTPM: 68.7
Sample A Male 71.4
Sample B Male 68.7
Sample C Female 85.2
Sample D Female 75.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.9
67815940 Antisense, RP_040920_02_B04, Mouse strain C57BL/6J (56 days, male) 8.6
70744515 Antisense, RP_050725_02_B08, Mouse strain C57BL/6J (56 days, male) 5.1
Pallidum
Expression energy: 2.5
67815940 Antisense, RP_040920_02_B04, Mouse strain C57BL/6J (56 days, male) 4.0
70744515 Antisense, RP_050725_02_B08, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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