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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:190.3 nTPM
HPA:190.3 nTPM
GTEx:359.3 nTPM
FANTOM5:367.1 Scaled Tags Per Million
Mouse:722.9 nTPM

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 190.3
Sample id Sample description nTPM
Amygdala
nTPM: 184.9
2814 Male, age 76, right hemisphere 216.7
2514 Male, age 75, right hemisphere 183.3
2695 Female, age 67, right hemisphere 181.7
1987 Female, age 91, left hemisphere 174.7
2517 Female, age 94, left hemisphere 168.3
Basal amygdala
nTPM: 186.6
2609 Male, age 75, right hemisphere 205.8
2243 Female, age 91, right hemisphere 201.1
2685 Female, age 94, left hemisphere 189.2
1955 Male, age 76, both hemispheres 185.1
2110 Male, age 80, left hemisphere 173.3
2827 Female, age 67, right hemisphere 165.3
Central amygdala
nTPM: 190.3
1905 Male, age 76, both hemispheres 201.2
2826 Female, age 94, left hemisphere 191.2
2701 Female, age 91, right hemisphere 188.1
2239 Male, age 80, left hemisphere 186.2
2515 Male, age 75, right hemisphere 184.6
Corticomedial amygdala
nTPM: 179.8
2829 Male, age 80, left hemisphere 195.2
2242 Female, age 91, right hemisphere 194.2
2428 Male, age 75, right hemisphere 177.8
2429 Female, age 94, left hemisphere 172.4
2240 Male, age 76, both hemispheres 170.9
2535 Female, age 67, right hemisphere 168.5
Lateral amygdala
nTPM: 178.2
1883 Male, age 76, both hemispheres 197.2
2534 Female, age 94, left hemisphere 191.7
2516 Male, age 75, right hemisphere 179.3
2255 Female, age 91, right hemisphere 178.2
2256 Male, age 80, left hemisphere 169.9
2830 Female, age 67, right hemisphere 153.0
Stria terminalis, bed nucleus
nTPM: 189.8
1974 Female, age 91, both hemispheres 207.7
2201 Male, age 74, unknown 181.9
2486 Female, age 94, both hemispheres 179.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 359.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 359.3
Samples: 152

Max nTPM: 852.4
Min nTPM: 108.1
Std nTPM: 106.5
Median nTPM: 342.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 852.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 763.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 741.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 618.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 564.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 558.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 547.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 528.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 525.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 510.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 503.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 498.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 486.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 486.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 474.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 472.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 471.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 466.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 466.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 465.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 464.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 460.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 457.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 452.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 447.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 439.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 438.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 436.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 436.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 434.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 431.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 428.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 428.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 425.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 415.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 415.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 413.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 413.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 410.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 406.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 405.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 405.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 404.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 404.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 404.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 403.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 399.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 393.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 392.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 391.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 390.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 388.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 387.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 384.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 381.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 380.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 378.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 375.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 371.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 368.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 365.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 365.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 362.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 362.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 358.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 357.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 354.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 353.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 353.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 353.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 352.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 351.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 346.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 346.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 344.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 342.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 341.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 340.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 339.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 339.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 338.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 338.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 337.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 336.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 335.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 335.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 333.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 332.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 332.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 329.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 329.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 328.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 327.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 325.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 325.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 321.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 319.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 319.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 316.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 313.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 310.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 309.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 309.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 307.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 306.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 306.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 305.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 304.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 304.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 301.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 298.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 297.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 294.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 294.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 292.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 291.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 289.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 287.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 283.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 280.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 280.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 278.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 277.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 275.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 274.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 274.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 272.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 267.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 264.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 261.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 259.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 257.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 257.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 253.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 250.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 240.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 237.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 237.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 236.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 234.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 228.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 228.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 224.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 224.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 213.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 212.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 211.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 206.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 197.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 177.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 141.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 108.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 367.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 367.1
FF:10151-102I7 76 years, female 367.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 722.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 722.9
Samples: 4

Max nTPM: 778.7
Min nTPM: 696.7
Sample A Male 778.7
Sample B Male 701.2
Sample C Female 696.7
Sample D Female 715.0

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