MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:221.6 nTPM
HPA:221.6 nTPM
GTEx:355.6 nTPM
FANTOM5:323.7 Scaled Tags Per Million
Mouse:1079.7 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 221.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 180.1
2666 Male, age 74, left hemisphere 196.0
1827 Male, age 72, unknown 189.6
2828 Female, age 72, unknown 186.7
2219 Male, age 76, both hemispheres 184.8
2586 Male, age 75, left hemisphere 183.9
1870 Female, age 42, unknown 181.1
2411 Female, age 72, unknown 179.6
1833 Male, age 53, unknown 169.7
1830 Male, age 51, unknown 165.3
2019 Male, age 18, unknown 163.8
Dorsal raphe nucleus
nTPM: 178.0
2750 Male, age 76, both hemispheres 194.4
2047 Male, age 72, unknown 185.6
2298 Female, age 72, unknown 183.3
1828 Male, age 53, unknown 176.7
2016 Female, age 72, unknown 150.0
Inferior colliculus
nTPM: 164.2
2849 Male, age 72, unknown 172.7
1890 Male, age 53, unknown 163.8
2097 Female, age 72, unknown 161.6
1848 Female, age 42, unknown 158.6
Median raphe nucleus
nTPM: 221.6
2220 Male, age 76, midline 221.6
Pedunculopontine tegmental nucleus
nTPM: 187.0
2334 Male, age 80, both hemispheres 194.6
2338 Male, age 61, both hemispheres 187.8
1921 Female, age 85, both hemispheres 178.5
Periaquaductal grey, anterior
nTPM: 183.9
1795 Male, age 51, unknown 193.7
1947 Male, age 18, unknown 190.2
2502 Female, age 75, unknown 167.8
Periaquaductal grey, dorsal
nTPM: 166.4
2850 Male, age 76, both hemispheres 174.4
1831 Male, age 72, unknown 166.0
1840 Male, age 53, unknown 165.1
2464 Female, age 72, unknown 160.2
Periaquaductal grey, lateral
nTPM: 154.0
2140 Male, age 76, both hemispheres 155.9
2053 Male, age 18, unknown 153.2
2272 Male, age 74, both hemispheres 152.9
Pretectal area
nTPM: 184.6
1817 Female, age 42, unknown 206.7
2007 Male, age 72, unknown 206.7
1816 Male, age 51, unknown 206.6
1944 Female, age 72, unknown 206.3
1815 Male, age 53, unknown 195.3
2667 Female, age 75, unknown 191.9
2224 Female, age 72, unknown 179.0
2825 Male, age 18, unknown 175.4
2407 Male, age 75, both hemispheres 163.1
2273 Male, age 74, both hemispheres 152.4
2316 Male, age 76, right hemisphere 147.0
Red nucleus
nTPM: 170.0
2785 Male, age 18, unknown 183.1
2588 Male, age 74, left hemisphere 180.4
2725 Female, age 75, unknown 179.7
1821 Female, age 72, unknown 173.1
2584 Male, age 75, left hemisphere 171.0
2769 Male, age 72, unknown 170.6
2503 Female, age 72, unknown 167.8
2823 Male, age 76, right hemisphere 167.3
2227 Male, age 72, unknown 167.2
1954 Female, age 42, unknown 161.0
1865 Male, age 51, unknown 159.6
1904 Male, age 53, unknown 159.5
Substantia nigra
nTPM: 195.7
1916 Female, age 42, unknown 237.0
2665 Male, age 74, both hemispheres 215.8
1941 Male, age 53, unknown 210.5
1851 Male, age 51, unknown 206.8
1889 Female, age 72, unknown 199.5
2699 Male, age 18, unknown 195.6
2583 Male, age 75, right hemisphere 185.1
2590 Female, age 75, unknown 179.9
2241 Male, age 72, unknown 167.1
2409 Female, age 72, unknown 160.1
Superior colliculus
nTPM: 172.1
1796 Male, age 53, unknown 188.2
2087 Female, age 72, unknown 184.9
2668 Female, age 75, unknown 180.5
2587 Male, age 74, left hemisphere 175.9
2261 Male, age 18, unknown 174.2
2664 Male, age 75, both hemispheres 172.6
1839 Male, age 51, unknown 167.6
1913 Female, age 42, unknown 166.3
1895 Male, age 76, right hemisphere 157.1
1995 Male, age 72, unknown 154.1
Ventral tegmental area
nTPM: 194.8
2218 Male, age 76, both hemispheres 223.6
1915 Female, age 42, unknown 208.0
2410 Female, age 72, unknown 194.1
2223 Female, age 72, unknown 186.6
1942 Male, age 51, unknown 182.3
2021 Male, age 53, unknown 174.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 355.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 355.6
Samples: 139

Max nTPM: 672.8
Min nTPM: 176.6
Std nTPM: 96.0
Median nTPM: 344.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 672.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 664.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 617.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 601.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 598.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 587.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 557.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 517.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 514.0
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 493.9
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 488.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 323.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 323.7
FF:10158-103A5 76 years, female 323.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1079.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 1079.7
Samples: 4

Max nTPM: 1188.9
Min nTPM: 996.4
Sample A Male 1049.5
Sample B Male 996.4
Sample C Female 1084.0
Sample D Female 1188.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.