MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:67.7 nTPM
HPA:67.7 nTPM
GTEx:63.3 nTPM
FANTOM5:157.8 Scaled Tags Per Million
Pig:22.7 nTPM
Mouse:34.4 nTPM
Allen mouse:4.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 67.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.1
2586 Male, age 75, left hemisphere 72.3
2019 Male, age 18, unknown 68.6
2666 Male, age 74, left hemisphere 66.4
1830 Male, age 51, unknown 65.7
2411 Female, age 72, unknown 64.7
2828 Female, age 72, unknown 64.3
1870 Female, age 42, unknown 63.8
1833 Male, age 53, unknown 63.5
1827 Male, age 72, unknown 60.5
2219 Male, age 76, both hemispheres 51.3
Dorsal raphe nucleus
nTPM: 57.2
2750 Male, age 76, both hemispheres 62.8
1828 Male, age 53, unknown 58.0
2016 Female, age 72, unknown 57.3
2047 Male, age 72, unknown 54.8
2298 Female, age 72, unknown 53.1
Inferior colliculus
nTPM: 58.2
1890 Male, age 53, unknown 62.0
1848 Female, age 42, unknown 57.5
2849 Male, age 72, unknown 57.5
2097 Female, age 72, unknown 55.8
Median raphe nucleus
nTPM: 58.4
2220 Male, age 76, midline 58.4
Pedunculopontine tegmental nucleus
nTPM: 59.3
2338 Male, age 61, both hemispheres 62.5
2334 Male, age 80, both hemispheres 59.6
1921 Female, age 85, both hemispheres 55.8
Periaquaductal grey, anterior
nTPM: 60.2
1947 Male, age 18, unknown 63.4
2502 Female, age 75, unknown 60.2
1795 Male, age 51, unknown 57.0
Periaquaductal grey, dorsal
nTPM: 57.3
2850 Male, age 76, both hemispheres 62.5
1831 Male, age 72, unknown 56.8
2464 Female, age 72, unknown 56.5
1840 Male, age 53, unknown 53.5
Periaquaductal grey, lateral
nTPM: 59.1
2140 Male, age 76, both hemispheres 64.3
2272 Male, age 74, both hemispheres 56.6
2053 Male, age 18, unknown 56.4
Pretectal area
nTPM: 59.8
2407 Male, age 75, both hemispheres 66.9
2007 Male, age 72, unknown 64.1
1817 Female, age 42, unknown 63.3
2316 Male, age 76, right hemisphere 63.0
1815 Male, age 53, unknown 62.9
1944 Female, age 72, unknown 58.9
1816 Male, age 51, unknown 57.5
2667 Female, age 75, unknown 57.3
2825 Male, age 18, unknown 57.2
2273 Male, age 74, both hemispheres 54.0
2224 Female, age 72, unknown 52.4
Red nucleus
nTPM: 67.7
2584 Male, age 75, left hemisphere 75.5
1865 Male, age 51, unknown 72.1
2785 Male, age 18, unknown 71.7
1904 Male, age 53, unknown 70.4
2227 Male, age 72, unknown 69.8
2769 Male, age 72, unknown 69.6
1954 Female, age 42, unknown 65.2
2588 Male, age 74, left hemisphere 65.1
1821 Female, age 72, unknown 64.8
2503 Female, age 72, unknown 64.8
2823 Male, age 76, right hemisphere 62.4
2725 Female, age 75, unknown 60.8
Substantia nigra
nTPM: 61.9
2583 Male, age 75, right hemisphere 68.5
2590 Female, age 75, unknown 67.1
2665 Male, age 74, both hemispheres 66.3
1851 Male, age 51, unknown 64.5
1889 Female, age 72, unknown 61.2
2409 Female, age 72, unknown 60.2
2699 Male, age 18, unknown 59.2
1916 Female, age 42, unknown 59.0
1941 Male, age 53, unknown 57.4
2241 Male, age 72, unknown 55.8
Superior colliculus
nTPM: 61.9
1913 Female, age 42, unknown 67.6
1995 Male, age 72, unknown 67.0
2668 Female, age 75, unknown 65.3
2664 Male, age 75, both hemispheres 63.7
1796 Male, age 53, unknown 62.2
2587 Male, age 74, left hemisphere 60.8
1839 Male, age 51, unknown 60.4
2261 Male, age 18, unknown 58.6
2087 Female, age 72, unknown 58.5
1895 Male, age 76, right hemisphere 54.8
Ventral tegmental area
nTPM: 61.7
2410 Female, age 72, unknown 65.0
2223 Female, age 72, unknown 62.9
2218 Male, age 76, both hemispheres 62.6
1915 Female, age 42, unknown 60.3
1942 Male, age 51, unknown 60.2
2021 Male, age 53, unknown 59.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 63.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.3
Samples: 139

Max nTPM: 135.6
Min nTPM: 37.6
Std nTPM: 18.6
Median nTPM: 59.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 135.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 125.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 119.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 111.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 102.2
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 100.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 97.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 96.1
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 94.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 94.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 93.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 157.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 157.8
FF:10158-103A5 76 years, female 157.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.7
Pig sample Sample description nTPM
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 29.6
Min nTPM: 18.2
Sample A Female 29.6
Sample B Female 19.5
Sample C Male 22.0
Sample D Male 18.2
Periaqueductal gray
nTPM: 15.9
Samples: 3

Max nTPM: 17.2
Min nTPM: 14.7
Sample B Female 17.2
Sample C Male 15.7
Sample D Male 14.7
Substantia nigra
nTPM: 21.0
Samples: 4

Max nTPM: 24.8
Min nTPM: 18.9
Sample A Female 21.2
Sample B Female 19.2
Sample C Male 18.9
Sample D Male 24.8
Superior colliculi
nTPM: 22.7
Samples: 4

Max nTPM: 23.9
Min nTPM: 22.0
Sample A Female 22.0
Sample B Female 22.6
Sample C Male 23.9
Sample D Male 22.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.4
Samples: 4

Max nTPM: 36.1
Min nTPM: 32.2
Sample A Male 36.1
Sample B Male 32.2
Sample C Female 34.6
Sample D Female 34.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.8
68844492 Antisense, RP_050222_01_G08, Mouse strain C57BL/6J (56 days, male) 4.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.