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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:64.5 nTPM
HPA:64.5 nTPM
GTEx:82.6 nTPM
FANTOM5:139.4 Scaled Tags Per Million
Pig:24.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 64.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 58.8
2565 Male, age 75, midline 64.3
2816 Male, age 47, midline 59.7
2194 Female, age 79, both hemispheres 58.3
1981 Female, age 72, midline 58.0
2048 Male, age 55, midline 53.9
Cervical spinal cord, dorsal horn
nTPM: 61.4
2296 Male, age 66, both hemispheres 64.3
2173 Female, age 72, unknown 63.5
2069 Male, age 47, both hemispheres 61.6
1877 Male, age 55, unknown 61.1
2297 Male, age 75, both hemispheres 60.3
2721 Male, age 90, both hemispheres 57.5
Cervical spinal cord, ventral horn
nTPM: 64.5
2809 Male, age 90, both hemispheres 68.7
2480 Male, age 75, both hemispheres 68.2
2295 Male, age 66, both hemispheres 63.8
2068 Male, age 55, unknown 62.5
2098 Female, age 72, unknown 62.5
2820 Female, age 79, both hemispheres 61.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 82.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 82.6
Samples: 159

Max nTPM: 176.3
Min nTPM: 38.9
Std nTPM: 23.8
Median nTPM: 77.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 176.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 150.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 149.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 148.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 146.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 137.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 133.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 132.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 123.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 121.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 120.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 119.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 118.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 116.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 115.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 114.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 113.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 113.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 112.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 111.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 111.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 109.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 109.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 109.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 109.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 107.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 106.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 106.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 103.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 102.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 102.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 101.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 100.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 99.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 99.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 98.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 98.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 98.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 97.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 95.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 95.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 92.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 92.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 91.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 90.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 90.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 89.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 89.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 88.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 87.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 87.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 87.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 87.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 86.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 85.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 85.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 85.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 85.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 84.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 83.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 83.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 83.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 82.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 81.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 81.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 81.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 81.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 80.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 80.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 79.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 79.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 78.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 78.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 78.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 78.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 78.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 78.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 78.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 77.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 77.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 77.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 76.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 76.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 75.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 75.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 75.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 75.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 75.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 75.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 75.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 75.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 74.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 74.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 74.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 74.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 74.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 73.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 73.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 73.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 72.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 72.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 72.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 72.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 72.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 71.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 71.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 71.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 70.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 69.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 69.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 69.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 69.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 68.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 68.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 68.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 68.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 68.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 67.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 67.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 66.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 65.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 65.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 65.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 65.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 64.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 64.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 64.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 63.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 63.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 62.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 62.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 62.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 62.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 62.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 61.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 61.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 60.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 60.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 60.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 59.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 59.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 58.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 57.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 57.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 56.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 55.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 54.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 53.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 52.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 52.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 51.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 50.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 48.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 46.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 46.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 44.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 44.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 43.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 38.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 139.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 139.5
FF:10181-103D1 60 years, female 143.0
FF:10159-103A6 76 years, female 135.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 24.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 23.2
Samples: 4

Max nTPM: 24.7
Min nTPM: 21.7
Sample A Female 23.1
Sample B Female 21.7
Sample C Male 23.1
Sample D Male 24.7
Ventral spinal cord
nTPM: 24.9
Samples: 4

Max nTPM: 26.0
Min nTPM: 23.4
Sample A Female 25.7
Sample B Female 23.4
Sample C Male 24.5
Sample D Male 26.0

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