MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:97.4 nTPM
HPA:97.4 nTPM
GTEx:46.6 nTPM
FANTOM5:106.4 Scaled Tags Per Million
Pig:141.2 nTPM
Mouse:1.6 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 97.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.3
2586 Male, age 75, left hemisphere 64.0
2828 Female, age 72, unknown 61.8
1870 Female, age 42, unknown 53.2
1827 Male, age 72, unknown 46.1
2666 Male, age 74, left hemisphere 34.7
2411 Female, age 72, unknown 32.0
1830 Male, age 51, unknown 27.9
1833 Male, age 53, unknown 27.1
2019 Male, age 18, unknown 23.9
2219 Male, age 76, both hemispheres 22.1
Dorsal raphe nucleus
nTPM: 52.2
2016 Female, age 72, unknown 79.1
1828 Male, age 53, unknown 51.9
2298 Female, age 72, unknown 50.1
2047 Male, age 72, unknown 49.1
2750 Male, age 76, both hemispheres 31.0
Inferior colliculus
nTPM: 45.3
2097 Female, age 72, unknown 50.5
1848 Female, age 42, unknown 48.7
2849 Male, age 72, unknown 46.8
1890 Male, age 53, unknown 35.1
Median raphe nucleus
nTPM: 38.9
2220 Male, age 76, midline 38.9
Pedunculopontine tegmental nucleus
nTPM: 36.2
2338 Male, age 61, both hemispheres 54.6
2334 Male, age 80, both hemispheres 29.0
1921 Female, age 85, both hemispheres 25.0
Periaquaductal grey, anterior
nTPM: 58.0
1795 Male, age 51, unknown 89.6
2502 Female, age 75, unknown 55.1
1947 Male, age 18, unknown 29.4
Periaquaductal grey, dorsal
nTPM: 77.4
1831 Male, age 72, unknown 103.5
1840 Male, age 53, unknown 94.9
2850 Male, age 76, both hemispheres 66.8
2464 Female, age 72, unknown 44.2
Periaquaductal grey, lateral
nTPM: 97.4
2053 Male, age 18, unknown 172.2
2140 Male, age 76, both hemispheres 60.8
2272 Male, age 74, both hemispheres 59.0
Pretectal area
nTPM: 51.3
2273 Male, age 74, both hemispheres 94.7
2407 Male, age 75, both hemispheres 69.0
2825 Male, age 18, unknown 62.3
2316 Male, age 76, right hemisphere 55.7
2667 Female, age 75, unknown 53.0
2224 Female, age 72, unknown 50.2
1815 Male, age 53, unknown 49.6
1944 Female, age 72, unknown 45.1
1816 Male, age 51, unknown 33.5
1817 Female, age 42, unknown 29.4
2007 Male, age 72, unknown 21.4
Red nucleus
nTPM: 26.5
2584 Male, age 75, left hemisphere 50.9
2725 Female, age 75, unknown 41.8
2503 Female, age 72, unknown 28.9
2769 Male, age 72, unknown 25.2
2227 Male, age 72, unknown 24.7
2785 Male, age 18, unknown 24.6
2823 Male, age 76, right hemisphere 23.8
1821 Female, age 72, unknown 21.5
1865 Male, age 51, unknown 20.8
1954 Female, age 42, unknown 19.6
1904 Male, age 53, unknown 18.5
2588 Male, age 74, left hemisphere 18.3
Substantia nigra
nTPM: 38.0
2699 Male, age 18, unknown 53.5
2583 Male, age 75, right hemisphere 51.8
1941 Male, age 53, unknown 45.2
1851 Male, age 51, unknown 39.0
2590 Female, age 75, unknown 35.8
2409 Female, age 72, unknown 35.4
2241 Male, age 72, unknown 32.8
2665 Male, age 74, both hemispheres 30.9
1916 Female, age 42, unknown 28.8
1889 Female, age 72, unknown 26.4
Superior colliculus
nTPM: 59.6
2664 Male, age 75, both hemispheres 105.9
1913 Female, age 42, unknown 103.7
1995 Male, age 72, unknown 74.2
2587 Male, age 74, left hemisphere 63.8
1796 Male, age 53, unknown 59.7
1839 Male, age 51, unknown 54.0
2087 Female, age 72, unknown 48.8
2261 Male, age 18, unknown 41.2
2668 Female, age 75, unknown 23.4
1895 Male, age 76, right hemisphere 21.5
Ventral tegmental area
nTPM: 60.9
2021 Male, age 53, unknown 86.5
1915 Female, age 42, unknown 78.2
1942 Male, age 51, unknown 72.2
2223 Female, age 72, unknown 49.3
2218 Male, age 76, both hemispheres 41.7
2410 Female, age 72, unknown 37.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.6
Samples: 139

Max nTPM: 382.8
Min nTPM: 4.1
Std nTPM: 48.6
Median nTPM: 32.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 382.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 236.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 224.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 181.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 140.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 127.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 124.5
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 122.1
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 116.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 116.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 115.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 106.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 106.4
FF:10158-103A5 76 years, female 106.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 141.2
Pig sample Sample description nTPM
Midbrain
nTPM: 141.2
Samples: 4

Max nTPM: 498.6
Min nTPM: 2.3
Sample A Female 498.6
Sample B Female 2.3
Sample C Male 46.0
Sample D Male 18.0
Periaqueductal gray
nTPM: 10.3
Samples: 3

Max nTPM: 16.5
Min nTPM: 4.2
Sample B Female 4.2
Sample C Male 10.1
Sample D Male 16.5
Substantia nigra
nTPM: 56.0
Samples: 4

Max nTPM: 110.5
Min nTPM: 32.0
Sample A Female 110.5
Sample B Female 32.0
Sample C Male 37.4
Sample D Male 44.1
Superior colliculi
nTPM: 44.9
Samples: 4

Max nTPM: 83.1
Min nTPM: 13.1
Sample A Female 83.1
Sample B Female 13.1
Sample C Male 41.4
Sample D Male 42.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.6
Samples: 4

Max nTPM: 1.7
Min nTPM: 1.5
Sample A Male 1.5
Sample B Male 1.7
Sample C Female 1.6
Sample D Female 1.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
1662 Antisense, RP_040507_02_F08, Mouse strain C57BL/6J (56 days, male) 2.8
1661 Antisense, RP_040507_02_F08, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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