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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:140.2 nTPM
HPA:140.2 nTPM
GTEx:144.8 nTPM
FANTOM5:204.7 Scaled Tags Per Million
Pig:137.5 nTPM
Mouse:164.0 nTPM
Allen mouse:4.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 140.2
Sample id Sample description nTPM
Amygdala
nTPM: 134.9
2695 Female, age 67, right hemisphere 172.2
1987 Female, age 91, left hemisphere 143.0
2814 Male, age 76, right hemisphere 124.3
2517 Female, age 94, left hemisphere 120.1
2514 Male, age 75, right hemisphere 114.8
Basal amygdala
nTPM: 125.6
2609 Male, age 75, right hemisphere 134.4
2110 Male, age 80, left hemisphere 131.9
1955 Male, age 76, both hemispheres 131.8
2243 Female, age 91, right hemisphere 124.4
2827 Female, age 67, right hemisphere 124.2
2685 Female, age 94, left hemisphere 106.8
Central amygdala
nTPM: 140.2
2515 Male, age 75, right hemisphere 160.3
1905 Male, age 76, both hemispheres 141.3
2826 Female, age 94, left hemisphere 138.3
2239 Male, age 80, left hemisphere 136.9
2701 Female, age 91, right hemisphere 123.9
Corticomedial amygdala
nTPM: 124.2
2242 Female, age 91, right hemisphere 148.6
2829 Male, age 80, left hemisphere 128.2
2428 Male, age 75, right hemisphere 127.0
2240 Male, age 76, both hemispheres 117.0
2535 Female, age 67, right hemisphere 113.7
2429 Female, age 94, left hemisphere 110.5
Lateral amygdala
nTPM: 138.2
2830 Female, age 67, right hemisphere 154.2
2516 Male, age 75, right hemisphere 147.8
2256 Male, age 80, left hemisphere 147.1
2255 Female, age 91, right hemisphere 129.6
1883 Male, age 76, both hemispheres 125.7
2534 Female, age 94, left hemisphere 124.5
Stria terminalis, bed nucleus
nTPM: 108.1
2201 Male, age 74, unknown 139.1
1974 Female, age 91, both hemispheres 95.8
2486 Female, age 94, both hemispheres 89.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 144.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 144.8
Samples: 152

Max nTPM: 475.9
Min nTPM: 16.5
Std nTPM: 60.5
Median nTPM: 131.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 475.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 364.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 291.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 281.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 264.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 264.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 263.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 252.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 251.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 248.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 248.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 240.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 231.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 227.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 215.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 215.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 214.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 209.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 209.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 207.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 207.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 205.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 203.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 201.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 197.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 192.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 191.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 191.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 188.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 186.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 184.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 184.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 184.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 175.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 174.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 174.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 173.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 173.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 169.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 169.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 168.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 165.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 162.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 161.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 160.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 160.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 160.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 160.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 158.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 158.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 157.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 156.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 156.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 148.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 148.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 148.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 147.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 146.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 146.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 145.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 145.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 144.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 142.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 142.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 142.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 140.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 139.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 138.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 136.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 136.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 135.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 134.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 133.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 133.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 133.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 131.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 131.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 130.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 130.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 130.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 129.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 129.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 128.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 126.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 126.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 125.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 124.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 124.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 124.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 124.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 123.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 123.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 122.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 121.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 120.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 119.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 118.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 117.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 117.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 116.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 116.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 115.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 115.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 115.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 114.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 114.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 113.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 113.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 113.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 113.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 112.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 111.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 110.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 109.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 109.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 108.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 106.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 104.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 104.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 104.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 104.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 104.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 100.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 99.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 98.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 97.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 97.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 94.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 94.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 93.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 92.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 90.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 90.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 89.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 86.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 85.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 82.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 80.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 79.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 76.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 76.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 75.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 73.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 68.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 65.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 63.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 62.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 62.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 62.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 51.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 47.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 16.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 204.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 204.7
FF:10151-102I7 76 years, female 204.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 137.5
Pig sample Sample description nTPM
Amygdala
nTPM: 137.5
Samples: 4

Max nTPM: 142.5
Min nTPM: 133.8
Sample A Female 139.2
Sample B Female 133.8
Sample C Male 134.4
Sample D Male 142.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 164.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 164.0
Samples: 4

Max nTPM: 170.0
Min nTPM: 157.1
Sample A Male 159.5
Sample B Male 157.1
Sample C Female 169.2
Sample D Female 170.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.1
69015290 Antisense, RP_050310_02_F08, Mouse strain C57BL/6J (56 days, male) 4.1

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