MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:186.2 nTPM
HPA:186.2 nTPM
GTEx:134.2 nTPM
FANTOM5:138.8 Scaled Tags Per Million
Pig:193.2 nTPM
Mouse:168.8 nTPM
Allen mouse:4.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 186.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 156.1
2586 Male, age 75, left hemisphere 233.7
2828 Female, age 72, unknown 196.5
2666 Male, age 74, left hemisphere 177.0
1827 Male, age 72, unknown 174.3
1870 Female, age 42, unknown 160.9
1833 Male, age 53, unknown 139.6
2411 Female, age 72, unknown 132.4
1830 Male, age 51, unknown 130.2
2219 Male, age 76, both hemispheres 123.3
2019 Male, age 18, unknown 93.6
Dorsal raphe nucleus
nTPM: 175.4
2047 Male, age 72, unknown 210.2
2016 Female, age 72, unknown 183.0
2298 Female, age 72, unknown 177.9
1828 Male, age 53, unknown 161.8
2750 Male, age 76, both hemispheres 144.4
Inferior colliculus
nTPM: 144.7
2849 Male, age 72, unknown 171.4
1848 Female, age 42, unknown 154.4
1890 Male, age 53, unknown 129.2
2097 Female, age 72, unknown 123.6
Median raphe nucleus
nTPM: 152.0
2220 Male, age 76, midline 152.0
Pedunculopontine tegmental nucleus
nTPM: 126.8
2334 Male, age 80, both hemispheres 138.9
1921 Female, age 85, both hemispheres 138.3
2338 Male, age 61, both hemispheres 103.1
Periaquaductal grey, anterior
nTPM: 186.2
1795 Male, age 51, unknown 190.7
1947 Male, age 18, unknown 187.4
2502 Female, age 75, unknown 180.5
Periaquaductal grey, dorsal
nTPM: 180.6
1840 Male, age 53, unknown 209.1
2850 Male, age 76, both hemispheres 187.2
2464 Female, age 72, unknown 166.5
1831 Male, age 72, unknown 159.6
Periaquaductal grey, lateral
nTPM: 186.2
2053 Male, age 18, unknown 222.0
2140 Male, age 76, both hemispheres 192.0
2272 Male, age 74, both hemispheres 144.5
Pretectal area
nTPM: 151.1
2825 Male, age 18, unknown 202.0
2224 Female, age 72, unknown 183.4
2667 Female, age 75, unknown 153.0
2273 Male, age 74, both hemispheres 152.0
2407 Male, age 75, both hemispheres 150.4
1816 Male, age 51, unknown 149.5
2316 Male, age 76, right hemisphere 140.1
1815 Male, age 53, unknown 139.5
1944 Female, age 72, unknown 139.2
1817 Female, age 42, unknown 132.9
2007 Male, age 72, unknown 119.7
Red nucleus
nTPM: 122.5
2725 Female, age 75, unknown 134.6
2503 Female, age 72, unknown 131.3
2588 Male, age 74, left hemisphere 129.4
2227 Male, age 72, unknown 129.1
2584 Male, age 75, left hemisphere 128.4
2769 Male, age 72, unknown 126.6
1821 Female, age 72, unknown 121.3
1904 Male, age 53, unknown 120.4
1865 Male, age 51, unknown 120.1
1954 Female, age 42, unknown 118.9
2823 Male, age 76, right hemisphere 114.0
2785 Male, age 18, unknown 96.5
Substantia nigra
nTPM: 136.3
2699 Male, age 18, unknown 167.1
2665 Male, age 74, both hemispheres 160.9
1916 Female, age 42, unknown 143.8
2590 Female, age 75, unknown 137.8
2583 Male, age 75, right hemisphere 137.2
1889 Female, age 72, unknown 132.4
1851 Male, age 51, unknown 130.9
1941 Male, age 53, unknown 128.1
2409 Female, age 72, unknown 115.8
2241 Male, age 72, unknown 109.4
Superior colliculus
nTPM: 159.6
2664 Male, age 75, both hemispheres 233.7
2261 Male, age 18, unknown 176.1
1796 Male, age 53, unknown 172.5
1839 Male, age 51, unknown 166.8
1995 Male, age 72, unknown 150.9
2087 Female, age 72, unknown 144.8
2587 Male, age 74, left hemisphere 144.4
2668 Female, age 75, unknown 138.2
1913 Female, age 42, unknown 137.3
1895 Male, age 76, right hemisphere 130.9
Ventral tegmental area
nTPM: 145.4
2021 Male, age 53, unknown 166.8
1942 Male, age 51, unknown 160.2
1915 Female, age 42, unknown 147.4
2218 Male, age 76, both hemispheres 135.5
2223 Female, age 72, unknown 131.5
2410 Female, age 72, unknown 131.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 134.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 134.2
Samples: 139

Max nTPM: 361.0
Min nTPM: 30.2
Std nTPM: 59.1
Median nTPM: 123.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 361.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 346.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 305.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 289.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 282.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 259.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 245.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 244.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 242.6
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 233.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 232.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 138.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 138.8
FF:10158-103A5 76 years, female 138.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 193.2
Pig sample Sample description nTPM
Midbrain
nTPM: 179.7
Samples: 4

Max nTPM: 206.6
Min nTPM: 156.4
Sample A Female 206.6
Sample B Female 196.0
Sample C Male 156.4
Sample D Male 159.7
Periaqueductal gray
nTPM: 193.2
Samples: 3

Max nTPM: 208.2
Min nTPM: 169.6
Sample B Female 208.2
Sample C Male 201.9
Sample D Male 169.6
Substantia nigra
nTPM: 191.4
Samples: 4

Max nTPM: 202.5
Min nTPM: 179.8
Sample A Female 198.7
Sample B Female 179.8
Sample C Male 202.5
Sample D Male 184.7
Superior colliculi
nTPM: 144.0
Samples: 4

Max nTPM: 168.5
Min nTPM: 104.1
Sample A Female 164.8
Sample B Female 104.1
Sample C Male 138.4
Sample D Male 168.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 168.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 168.8
Samples: 4

Max nTPM: 178.2
Min nTPM: 159.5
Sample A Male 178.2
Sample B Male 159.5
Sample C Female 174.4
Sample D Female 163.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
69015290 Antisense, RP_050310_02_F08, Mouse strain C57BL/6J (56 days, male) 4.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.