MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:125.6 nTPM
HPA:125.6 nTPM
GTEx:132.7 nTPM
FANTOM5:112.7 Scaled Tags Per Million
Pig:29.2 nTPM
Mouse:76.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 125.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 122.4
1870 Female, age 42, unknown 128.0
2411 Female, age 72, unknown 126.8
2019 Male, age 18, unknown 124.4
1833 Male, age 53, unknown 123.7
1830 Male, age 51, unknown 123.5
2828 Female, age 72, unknown 122.5
1827 Male, age 72, unknown 122.4
2666 Male, age 74, left hemisphere 119.9
2219 Male, age 76, both hemispheres 117.0
2586 Male, age 75, left hemisphere 115.5
Dorsal raphe nucleus
nTPM: 124.8
2298 Female, age 72, unknown 131.3
2016 Female, age 72, unknown 126.1
2750 Male, age 76, both hemispheres 124.8
1828 Male, age 53, unknown 122.1
2047 Male, age 72, unknown 120.0
Inferior colliculus
nTPM: 121.5
2097 Female, age 72, unknown 125.4
1848 Female, age 42, unknown 120.8
1890 Male, age 53, unknown 120.2
2849 Male, age 72, unknown 119.6
Median raphe nucleus
nTPM: 122.1
2220 Male, age 76, midline 122.1
Pedunculopontine tegmental nucleus
nTPM: 123.3
2334 Male, age 80, both hemispheres 123.6
2338 Male, age 61, both hemispheres 123.5
1921 Female, age 85, both hemispheres 122.7
Periaquaductal grey, anterior
nTPM: 123.0
1947 Male, age 18, unknown 124.5
2502 Female, age 75, unknown 124.1
1795 Male, age 51, unknown 120.4
Periaquaductal grey, dorsal
nTPM: 120.2
2850 Male, age 76, both hemispheres 121.6
2464 Female, age 72, unknown 120.5
1831 Male, age 72, unknown 120.0
1840 Male, age 53, unknown 118.8
Periaquaductal grey, lateral
nTPM: 121.8
2272 Male, age 74, both hemispheres 122.9
2053 Male, age 18, unknown 122.0
2140 Male, age 76, both hemispheres 120.4
Pretectal area
nTPM: 122.4
1815 Male, age 53, unknown 125.5
2224 Female, age 72, unknown 125.4
2273 Male, age 74, both hemispheres 123.5
1817 Female, age 42, unknown 123.4
2007 Male, age 72, unknown 122.5
2667 Female, age 75, unknown 122.4
1816 Male, age 51, unknown 122.1
2825 Male, age 18, unknown 121.1
1944 Female, age 72, unknown 120.9
2316 Male, age 76, right hemisphere 120.5
2407 Male, age 75, both hemispheres 119.4
Red nucleus
nTPM: 125.6
1821 Female, age 72, unknown 133.8
2769 Male, age 72, unknown 129.3
1904 Male, age 53, unknown 128.8
1954 Female, age 42, unknown 128.3
2227 Male, age 72, unknown 128.0
1865 Male, age 51, unknown 127.3
2823 Male, age 76, right hemisphere 125.6
2785 Male, age 18, unknown 124.8
2503 Female, age 72, unknown 124.5
2725 Female, age 75, unknown 122.0
2584 Male, age 75, left hemisphere 117.6
2588 Male, age 74, left hemisphere 116.9
Substantia nigra
nTPM: 121.6
1889 Female, age 72, unknown 126.6
1851 Male, age 51, unknown 125.5
1916 Female, age 42, unknown 121.6
2590 Female, age 75, unknown 121.3
1941 Male, age 53, unknown 121.1
2699 Male, age 18, unknown 121.1
2665 Male, age 74, both hemispheres 121.0
2409 Female, age 72, unknown 120.5
2241 Male, age 72, unknown 119.4
2583 Male, age 75, right hemisphere 118.4
Superior colliculus
nTPM: 122.8
1913 Female, age 42, unknown 128.5
1995 Male, age 72, unknown 125.5
2587 Male, age 74, left hemisphere 125.2
2668 Female, age 75, unknown 124.7
1895 Male, age 76, right hemisphere 123.2
1796 Male, age 53, unknown 121.3
2261 Male, age 18, unknown 120.5
1839 Male, age 51, unknown 120.3
2087 Female, age 72, unknown 120.1
2664 Male, age 75, both hemispheres 118.9
Ventral tegmental area
nTPM: 121.9
2410 Female, age 72, unknown 124.3
1915 Female, age 42, unknown 123.3
2223 Female, age 72, unknown 122.0
2021 Male, age 53, unknown 121.2
2218 Male, age 76, both hemispheres 120.7
1942 Male, age 51, unknown 120.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 132.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 132.7
Samples: 139

Max nTPM: 328.1
Min nTPM: 72.7
Std nTPM: 39.0
Median nTPM: 123.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 328.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 316.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 227.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 217.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 216.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 209.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 205.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 202.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 196.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 195.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 189.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 112.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 112.7
FF:10158-103A5 76 years, female 112.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.2
Pig sample Sample description nTPM
Midbrain
nTPM: 29.2
Samples: 4

Max nTPM: 49.8
Min nTPM: 17.9
Sample A Female 49.8
Sample B Female 29.3
Sample C Male 19.9
Sample D Male 17.9
Periaqueductal gray
nTPM: 21.9
Samples: 3

Max nTPM: 24.4
Min nTPM: 18.9
Sample B Female 24.4
Sample C Male 22.4
Sample D Male 18.9
Substantia nigra
nTPM: 27.5
Samples: 4

Max nTPM: 39.3
Min nTPM: 21.4
Sample A Female 39.3
Sample B Female 27.2
Sample C Male 21.4
Sample D Male 22.0
Superior colliculi
nTPM: 27.7
Samples: 4

Max nTPM: 39.3
Min nTPM: 22.9
Sample A Female 39.3
Sample B Female 23.6
Sample C Male 25.1
Sample D Male 22.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 76.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 76.2
Samples: 4

Max nTPM: 87.5
Min nTPM: 67.1
Sample A Male 78.7
Sample B Male 71.4
Sample C Female 67.1
Sample D Female 87.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
74635126 Antisense, RP_060215_03_D06, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.