MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:48.4 nTPM
HPA:48.4 nTPM
GTEx:46.0 nTPM
FANTOM5:23.7 Scaled Tags Per Million
Pig:0.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.9
2019 Male, age 18, unknown 47.6
2411 Female, age 72, unknown 46.5
2219 Male, age 76, both hemispheres 46.0
1827 Male, age 72, unknown 45.4
2586 Male, age 75, left hemisphere 43.8
1870 Female, age 42, unknown 43.3
1833 Male, age 53, unknown 43.1
2666 Male, age 74, left hemisphere 42.0
1830 Male, age 51, unknown 41.7
2828 Female, age 72, unknown 39.9
Dorsal raphe nucleus
nTPM: 43.9
1828 Male, age 53, unknown 47.0
2298 Female, age 72, unknown 45.5
2047 Male, age 72, unknown 43.7
2750 Male, age 76, both hemispheres 42.4
2016 Female, age 72, unknown 40.9
Inferior colliculus
nTPM: 44.7
2097 Female, age 72, unknown 48.1
1848 Female, age 42, unknown 45.9
1890 Male, age 53, unknown 44.3
2849 Male, age 72, unknown 40.4
Median raphe nucleus
nTPM: 44.9
2220 Male, age 76, midline 44.9
Pedunculopontine tegmental nucleus
nTPM: 42.9
1921 Female, age 85, both hemispheres 46.0
2334 Male, age 80, both hemispheres 45.1
2338 Male, age 61, both hemispheres 37.5
Periaquaductal grey, anterior
nTPM: 43.4
1947 Male, age 18, unknown 45.0
2502 Female, age 75, unknown 43.7
1795 Male, age 51, unknown 41.6
Periaquaductal grey, dorsal
nTPM: 41.4
1840 Male, age 53, unknown 43.1
2464 Female, age 72, unknown 42.2
1831 Male, age 72, unknown 40.6
2850 Male, age 76, both hemispheres 39.9
Periaquaductal grey, lateral
nTPM: 41.1
2272 Male, age 74, both hemispheres 44.1
2053 Male, age 18, unknown 41.5
2140 Male, age 76, both hemispheres 37.7
Pretectal area
nTPM: 45.1
1816 Male, age 51, unknown 51.9
1944 Female, age 72, unknown 49.8
1817 Female, age 42, unknown 47.5
2007 Male, age 72, unknown 46.2
2667 Female, age 75, unknown 45.5
2273 Male, age 74, both hemispheres 45.2
1815 Male, age 53, unknown 45.0
2224 Female, age 72, unknown 45.0
2825 Male, age 18, unknown 41.3
2407 Male, age 75, both hemispheres 41.0
2316 Male, age 76, right hemisphere 37.5
Red nucleus
nTPM: 42.8
1821 Female, age 72, unknown 48.9
2588 Male, age 74, left hemisphere 44.0
1954 Female, age 42, unknown 43.5
2725 Female, age 75, unknown 43.4
1865 Male, age 51, unknown 42.8
2503 Female, age 72, unknown 42.8
2785 Male, age 18, unknown 42.6
1904 Male, age 53, unknown 41.6
2227 Male, age 72, unknown 41.3
2769 Male, age 72, unknown 41.3
2584 Male, age 75, left hemisphere 41.1
2823 Male, age 76, right hemisphere 40.6
Substantia nigra
nTPM: 48.4
2241 Male, age 72, unknown 60.9
1916 Female, age 42, unknown 52.0
1889 Female, age 72, unknown 49.8
2409 Female, age 72, unknown 49.5
1941 Male, age 53, unknown 48.9
1851 Male, age 51, unknown 48.8
2590 Female, age 75, unknown 45.2
2699 Male, age 18, unknown 43.6
2583 Male, age 75, right hemisphere 42.9
2665 Male, age 74, both hemispheres 42.4
Superior colliculus
nTPM: 43.7
2087 Female, age 72, unknown 48.2
2261 Male, age 18, unknown 45.8
1895 Male, age 76, right hemisphere 44.7
2668 Female, age 75, unknown 44.6
2587 Male, age 74, left hemisphere 43.6
1796 Male, age 53, unknown 43.3
2664 Male, age 75, both hemispheres 43.1
1839 Male, age 51, unknown 42.8
1913 Female, age 42, unknown 40.9
1995 Male, age 72, unknown 40.2
Ventral tegmental area
nTPM: 44.8
2410 Female, age 72, unknown 47.6
1915 Female, age 42, unknown 47.0
2218 Male, age 76, both hemispheres 46.6
2223 Female, age 72, unknown 43.3
1942 Male, age 51, unknown 42.9
2021 Male, age 53, unknown 41.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.0
Samples: 139

Max nTPM: 90.0
Min nTPM: 23.6
Std nTPM: 11.5
Median nTPM: 45.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 90.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 86.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 79.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 79.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 75.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 74.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 73.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 66.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 66.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 64.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 64.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.7
FF:10158-103A5 76 years, female 23.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.0
Pig sample Sample description nTPM
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.1
Sample C Male 0.1
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.0
Samples: 3

Max nTPM: 0.1
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 0.1
Sample D Male 0.0
Substantia nigra
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Superior colliculi
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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