HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:31.1 nTPM
HPA:31.1 nTPM
GTEx:16.5 nTPM
FANTOM5:238.5 Scaled Tags Per Million
Pig:41.1 nTPM
Mouse:57.0 nTPM
Allen mouse:13.3 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 31.1
Sample id Sample description nTPM
Hippocampus
nTPM: 9.7
2621 Female, age 67, right hemisphere 17.3
1911 Female, age 85, right hemisphere 12.2
2529 Female, age 94, left hemisphere 11.9
1898 Male, age 80, left hemisphere 7.8
2148 Female, age 91, left hemisphere 5.3
1855 Male, age 76, left hemisphere 3.9
Dentate gyrus
nTPM: 7.4
1927 Female, age 91, both hemispheres 20.8
2246 Female, age 85, both hemispheres 12.4
2531 Female, age 67, both hemispheres 9.7
2010 Male, age 76, both hemispheres 1.8
2528 Male, age 74, both hemispheres 0.0
2530 Female, age 94, left hemisphere 0.0
Entorhinal gyrus
nTPM: 21.9
2613 Female, age 94, left hemisphere 38.5
1938 Female, age 85, left hemisphere 38.4
1787 Male, age 76, left hemisphere 22.9
2764 Male, age 80, right hemisphere 16.5
2686 Male, age 75, right hemisphere 15.2
2117 Female, age 91, right hemisphere 0.0
Hippocampus, CA1
nTPM: 13.5
2749 Male, age 80, left hemisphere 35.7
2527 Male, age 74, both hemispheres 13.8
1873 Female, age 85, both hemispheres 7.2
2045 Male, age 76, both hemispheres 7.1
2082 Female, age 91, right hemisphere 3.5
Hippocampus, CA2
nTPM: 7.3
1892 Male, age 76, both hemispheres 14.8
1963 Male, age 80, left hemisphere 7.5
2113 Female, age 91, right hemisphere 6.7
1940 Female, age 85, left hemisphere 6.5
2437 Female, age 94, left hemisphere 6.3
2249 Male, age 74, both hemispheres 1.9
Hippocampus, CA3
nTPM: 11.3
2137 Male, age 80, left hemisphere 29.3
2861 Female, age 67, both hemispheres 11.5
1867 Male, age 76, both hemispheres 9.2
1891 Female, age 85, both hemispheres 8.0
2620 Female, age 94, left hemisphere 8.0
2436 Male, age 74, both hemispheres 1.8
Parahippocampal cortex
nTPM: 19.9
1850 Male, age 80, both hemispheres 29.8
2250 Female, age 67, right hemisphere 22.1
1933 Female, age 85, both hemispheres 21.6
2622 Female, age 67, right hemisphere 21.6
2245 Female, age 91, both hemispheres 21.4
2693 Female, age 94, both hemispheres 21.4
1990 Female, age 91, right hemisphere 20.0
2532 Female, age 72, left hemisphere 17.0
2692 Male, age 74, both hemispheres 13.9
2018 Male, age 76, both hemispheres 10.4
Perirhinal gyrus
nTPM: 31.1
1847 Female, age 91, left hemisphere 40.9
1841 Female, age 85, right hemisphere 32.9
2848 Male, age 76, right hemisphere 30.6
1794 Male, age 80, right hemisphere 29.7
2521 Female, age 94, right hemisphere 21.2
Subiculum
nTPM: 8.1
1977 Female, age 85, both hemispheres 21.7
1901 Male, age 80, both hemispheres 10.6
2438 Female, age 94, left hemisphere 9.1
2619 Male, age 74, both hemispheres 7.5
2042 Male, age 76, both hemispheres 0.0
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.5
Samples: 197

Max nTPM: 43.4
Min nTPM: 4.5
Std nTPM: 7.0
Median nTPM: 15.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 43.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 37.1
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 33.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 33.5
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 33.3
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 30.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 30.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 30.1
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 29.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 29.5
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 28.5
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 238.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 238.5
FF:10169-103B7 60 years, female 256.3
FF:10153-102I9 76 years, female 220.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 41.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 36.1
Samples: 4

Max nTPM: 39.2
Min nTPM: 34.8
Sample A Female 34.8
Sample B Female 39.2
Sample C Male 35.2
Sample D Male 35.2
Entorhinal cortex
nTPM: 41.1
Samples: 4

Max nTPM: 43.5
Min nTPM: 39.8
Sample A Female 39.8
Sample B Female 41.0
Sample C Male 43.5
Sample D Male 40.2
Subiculum
nTPM: 34.5
Samples: 4

Max nTPM: 41.3
Min nTPM: 29.9
Sample A Female 41.3
Sample B Female 32.1
Sample C Male 34.5
Sample D Male 29.9
Ventral hippocampus
nTPM: 33.4
Samples: 4

Max nTPM: 51.1
Min nTPM: 24.8
Sample A Female 25.3
Sample B Female 32.4
Sample C Male 24.8
Sample D Male 51.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 57.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 50.0
Samples: 4

Max nTPM: 55.5
Min nTPM: 45.4
Sample A Male 50.3
Sample B Male 48.6
Sample C Female 45.4
Sample D Female 55.5
Hippocampal formation
nTPM: 57.0
Samples: 4

Max nTPM: 64.1
Min nTPM: 45.2
Sample A Male 57.4
Sample B Male 64.1
Sample C Female 61.4
Sample D Female 45.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 13.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.3
69236855 Antisense, RP_050331_01_C12, Mouse strain C57BL/6J (56 days, male) 13.3
71247597 Antisense, RP_050331_01_C12, Mouse strain C57BL/6J (56 days, male) 9.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.