MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:488.1 nTPM
HPA:488.1 nTPM
GTEx:39.9 nTPM
FANTOM5:105.1 Scaled Tags Per Million
Pig:136.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 488.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 482.1
1870 Female, age 42, unknown 493.4
2666 Male, age 74, left hemisphere 492.1
1827 Male, age 72, unknown 487.4
2586 Male, age 75, left hemisphere 485.7
1833 Male, age 53, unknown 484.6
1830 Male, age 51, unknown 483.6
2828 Female, age 72, unknown 482.3
2411 Female, age 72, unknown 477.5
2019 Male, age 18, unknown 475.8
2219 Male, age 76, both hemispheres 458.6
Dorsal raphe nucleus
nTPM: 476.3
2750 Male, age 76, both hemispheres 482.2
2298 Female, age 72, unknown 476.3
1828 Male, age 53, unknown 476.2
2016 Female, age 72, unknown 475.5
2047 Male, age 72, unknown 471.5
Inferior colliculus
nTPM: 475.4
2849 Male, age 72, unknown 479.3
2097 Female, age 72, unknown 479.2
1890 Male, age 53, unknown 471.9
1848 Female, age 42, unknown 471.1
Median raphe nucleus
nTPM: 468.9
2220 Male, age 76, midline 468.9
Pedunculopontine tegmental nucleus
nTPM: 486.3
2338 Male, age 61, both hemispheres 502.5
2334 Male, age 80, both hemispheres 483.8
1921 Female, age 85, both hemispheres 472.7
Periaquaductal grey, anterior
nTPM: 466.8
1947 Male, age 18, unknown 467.7
2502 Female, age 75, unknown 466.6
1795 Male, age 51, unknown 466.1
Periaquaductal grey, dorsal
nTPM: 466.6
1831 Male, age 72, unknown 470.6
2850 Male, age 76, both hemispheres 468.0
1840 Male, age 53, unknown 466.8
2464 Female, age 72, unknown 460.9
Periaquaductal grey, lateral
nTPM: 468.5
2053 Male, age 18, unknown 477.1
2140 Male, age 76, both hemispheres 464.7
2272 Male, age 74, both hemispheres 463.9
Pretectal area
nTPM: 476.1
1815 Male, age 53, unknown 483.7
1817 Female, age 42, unknown 483.3
2667 Female, age 75, unknown 483.1
2825 Male, age 18, unknown 483.0
2007 Male, age 72, unknown 482.2
1816 Male, age 51, unknown 477.5
2316 Male, age 76, right hemisphere 476.2
2407 Male, age 75, both hemispheres 468.5
2224 Female, age 72, unknown 468.2
1944 Female, age 72, unknown 467.1
2273 Male, age 74, both hemispheres 464.2
Red nucleus
nTPM: 488.1
1821 Female, age 72, unknown 500.1
2503 Female, age 72, unknown 497.1
2823 Male, age 76, right hemisphere 496.2
1954 Female, age 42, unknown 491.4
1865 Male, age 51, unknown 490.0
1904 Male, age 53, unknown 489.8
2584 Male, age 75, left hemisphere 486.8
2227 Male, age 72, unknown 485.4
2588 Male, age 74, left hemisphere 482.9
2725 Female, age 75, unknown 481.9
2769 Male, age 72, unknown 481.2
2785 Male, age 18, unknown 474.6
Substantia nigra
nTPM: 485.3
2699 Male, age 18, unknown 500.0
2665 Male, age 74, both hemispheres 497.3
1916 Female, age 42, unknown 495.0
1851 Male, age 51, unknown 491.7
1889 Female, age 72, unknown 486.2
2590 Female, age 75, unknown 483.6
1941 Male, age 53, unknown 482.2
2583 Male, age 75, right hemisphere 478.6
2241 Male, age 72, unknown 472.5
2409 Female, age 72, unknown 465.7
Superior colliculus
nTPM: 479.9
1913 Female, age 42, unknown 493.7
2587 Male, age 74, left hemisphere 493.5
1995 Male, age 72, unknown 485.2
1796 Male, age 53, unknown 479.8
1895 Male, age 76, right hemisphere 479.4
2668 Female, age 75, unknown 479.3
1839 Male, age 51, unknown 478.7
2664 Male, age 75, both hemispheres 478.2
2261 Male, age 18, unknown 468.0
2087 Female, age 72, unknown 463.6
Ventral tegmental area
nTPM: 478.1
1915 Female, age 42, unknown 487.8
2410 Female, age 72, unknown 487.8
2223 Female, age 72, unknown 482.9
2021 Male, age 53, unknown 471.2
2218 Male, age 76, both hemispheres 470.8
1942 Male, age 51, unknown 468.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.9
Samples: 139

Max nTPM: 159.5
Min nTPM: 13.0
Std nTPM: 23.1
Median nTPM: 34.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 159.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 131.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 119.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 114.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 93.5
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 91.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 80.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 78.8
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 75.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 73.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 73.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 105.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 105.1
FF:10158-103A5 76 years, female 105.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 136.3
Pig sample Sample description nTPM
Midbrain
nTPM: 129.2
Samples: 4

Max nTPM: 171.6
Min nTPM: 102.6
Sample A Female 171.6
Sample B Female 136.7
Sample C Male 105.8
Sample D Male 102.6
Periaqueductal gray
nTPM: 117.7
Samples: 3

Max nTPM: 125.1
Min nTPM: 104.0
Sample B Female 124.1
Sample C Male 125.1
Sample D Male 104.0
Substantia nigra
nTPM: 124.7
Samples: 4

Max nTPM: 153.9
Min nTPM: 111.9
Sample A Female 153.9
Sample B Female 118.0
Sample C Male 111.9
Sample D Male 115.0
Superior colliculi
nTPM: 136.3
Samples: 4

Max nTPM: 160.2
Min nTPM: 118.3
Sample A Female 160.2
Sample B Female 132.5
Sample C Male 118.3
Sample D Male 134.3

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The Human Protein Atlas project is funded
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