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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:504.7 nTPM
HPA:504.7 nTPM
GTEx:56.4 nTPM
FANTOM5:155.0 Scaled Tags Per Million
Pig:142.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 504.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 491.7
1981 Female, age 72, midline 509.5
2565 Male, age 75, midline 504.1
2816 Male, age 47, midline 487.4
2194 Female, age 79, both hemispheres 483.4
2048 Male, age 55, midline 473.8
Cervical spinal cord, dorsal horn
nTPM: 492.3
2173 Female, age 72, unknown 529.8
2296 Male, age 66, both hemispheres 514.7
1877 Male, age 55, unknown 487.1
2069 Male, age 47, both hemispheres 485.4
2721 Male, age 90, both hemispheres 470.9
2297 Male, age 75, both hemispheres 466.2
Cervical spinal cord, ventral horn
nTPM: 504.7
2480 Male, age 75, both hemispheres 526.4
2809 Male, age 90, both hemispheres 520.1
2098 Female, age 72, unknown 512.5
2068 Male, age 55, unknown 493.0
2295 Male, age 66, both hemispheres 489.6
2820 Female, age 79, both hemispheres 486.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 56.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 56.4
Samples: 159

Max nTPM: 113.7
Min nTPM: 13.6
Std nTPM: 22.3
Median nTPM: 51.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 113.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 111.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 109.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 108.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 106.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 105.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 99.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 98.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 98.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 97.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 94.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 92.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 91.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 91.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 91.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 90.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 90.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 89.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 89.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 87.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 87.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 85.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 85.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 84.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 83.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 83.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 81.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 81.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 81.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 80.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 80.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 79.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 78.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 78.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 77.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 72.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 72.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 71.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 71.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 71.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 70.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 69.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 69.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 67.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 67.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 65.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 65.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 65.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 64.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 64.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 63.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 63.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 60.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 60.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 60.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 60.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 59.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 59.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 59.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 59.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 59.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 58.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 57.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 57.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 56.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 55.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 55.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 54.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 53.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 53.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 53.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 52.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 52.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 52.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 52.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 52.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 52.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 51.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 51.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 51.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 51.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 50.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 50.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 50.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 50.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 50.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 50.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 49.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 49.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 49.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 48.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 48.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 48.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 48.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 47.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 47.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 46.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 46.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 46.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 46.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 46.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 46.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 45.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 44.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 43.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 43.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 43.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 42.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 42.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 42.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 41.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 41.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 41.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 41.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 41.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 40.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 40.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 40.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 39.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 39.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 39.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 38.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 38.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 38.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 38.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 38.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 37.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 37.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 37.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 36.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 36.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 36.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 35.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 35.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 35.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 35.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 35.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 34.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 34.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 33.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 33.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 32.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 32.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 31.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 31.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 30.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 30.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 29.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 29.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 28.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 26.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 25.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 23.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 22.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 20.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 19.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 19.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 15.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 13.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 155.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 155.0
FF:10181-103D1 60 years, female 196.0
FF:10159-103A6 76 years, female 114.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 142.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 133.2
Samples: 4

Max nTPM: 150.5
Min nTPM: 120.5
Sample A Female 120.5
Sample B Female 139.5
Sample C Male 150.5
Sample D Male 122.4
Ventral spinal cord
nTPM: 142.9
Samples: 4

Max nTPM: 166.6
Min nTPM: 116.5
Sample A Female 116.5
Sample B Female 166.6
Sample C Male 145.3
Sample D Male 143.1

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