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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:507.8 nTPM
HPA:507.8 nTPM
FANTOM5:126.3 Scaled Tags Per Million
Pig:137.8 nTPM

PONS - HPA Brain RNA-seq
Max nTPM 507.8
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 480.8
2090 Male, age 80, both hemispheres 491.6
2188 Female, age 91, both hemispheres 489.7
2301 Female, age 85, both hemispheres 476.6
1984 Male, age 76, both hemispheres 465.1
Dorsal cochlear nucleus
nTPM: 484.8
2802 Male, age 74, right hemisphere 491.7
2370 Male, age 61, both hemispheres 490.6
2187 Female, age 91, both hemispheres 490.4
2058 Male, age 76, both hemispheres 477.4
2378 Male, age 80, both hemispheres 474.2
Dorsal tegmental nucleus
nTPM: 482.7
2083 Male, age 80, both hemispheres 497.4
2358 Male, age 61, both hemispheres 485.3
2326 Male, age 74, both hemispheres 477.9
1936 Male, age 76, left hemisphere 470.3
Dorsolateral tegmental area
nTPM: 488.0
2337 Male, age 61, both hemispheres 512.4
2654 Male, age 80, both hemispheres 496.6
2751 Female, age 85, both hemispheres 488.5
2141 Male, age 76, both hemispheres 472.1
2360 Male, age 74, both hemispheres 470.5
Kolliker-Fuse nucleus
nTPM: 492.5
2793 Female, age 91, left hemisphere 506.3
2163 Male, age 80, both hemispheres 492.1
2315 Male, age 76, right hemisphere 479.1
Lateral lemniscal nuclei
nTPM: 475.7
2036 Male, age 80, both hemispheres 496.9
2746 Female, age 85, left hemisphere 478.5
2169 Male, age 76, both hemispheres 476.0
2320 Female, age 91, left hemisphere 470.2
2453 Male, age 74, right hemisphere 456.8
Lateral parabrachial nucleus
nTPM: 498.0
2792 Male, age 76, both hemispheres 518.1
2790 Male, age 61, both hemispheres 493.5
2013 Male, age 80, both hemispheres 490.9
2139 Female, age 85, right hemisphere 489.6
Lateral vestibular nucleus
nTPM: 481.0
2311 Male, age 80, both hemispheres 483.2
2184 Male, age 76, both hemispheres 478.7
Locus coeruleus
nTPM: 471.8
2123 Female, age 91, both hemispheres 484.4
2720 Male, age 74, both hemispheres 482.8
2162 Male, age 80, both hemispheres 473.2
2014 Male, age 55, unknown 470.0
2317 Female, age 72, unknown 469.2
1980 Male, age 76, both hemispheres 463.6
2788 Male, age 74, unknown 459.1
Medial olivary nucleus
nTPM: 507.8
1943 Male, age 61, both hemispheres 530.6
2138 Female, age 91, both hemispheres 503.1
1962 Male, age 76, both hemispheres 501.2
2851 Male, age 80, both hemispheres 496.4
Medial parabrachial nucleus
nTPM: 485.3
2854 Male, age 80, both hemispheres 499.6
2170 Female, age 91, both hemispheres 499.0
2156 Male, age 61, both hemispheres 479.2
2463 Female, age 85, right hemisphere 478.4
2786 Male, age 76, both hemispheres 470.4
Medial periolivary nuclei
nTPM: 479.9
2063 Male, age 76, both hemispheres 487.6
2791 Male, age 74, right hemisphere 484.3
2081 Male, age 80, both hemispheres 481.8
2171 Female, age 85, both hemispheres 473.4
2458 Female, age 91, both hemispheres 472.5
Motor facial nucleus
nTPM: 479.8
2697 Female, age 85, both hemispheres 491.9
2062 Male, age 76, both hemispheres 486.0
2126 Male, age 61, both hemispheres 483.9
2365 Male, age 74, right hemisphere 482.7
2795 Female, age 91, both hemispheres 476.6
2327 Male, age 80, both hemispheres 457.8
Motor trigeminal nucleus
nTPM: 477.8
2335 Male, age 61, both hemispheres 482.9
2079 Male, age 80, both hemispheres 481.8
2560 Male, age 74, both hemispheres 479.7
2309 Male, age 76, both hemispheres 478.4
2321 Female, age 91, both hemispheres 466.2
Nuclei of the trapezoid body
nTPM: 480.3
1983 Male, age 76, both hemispheres 501.4
2159 Male, age 61, both hemispheres 484.9
2166 Male, age 80, both hemispheres 475.6
2735 Female, age 85, both hemispheres 473.9
2368 Female, age 91, both hemispheres 465.9
Paramedian reticular nucleus
nTPM: 482.2
2050 Female, age 85, both hemispheres 499.6
2057 Male, age 80, both hemispheres 482.1
2313 Male, age 61, both hemispheres 476.8
2052 Male, age 76, both hemispheres 470.4
Pontine nuclei
nTPM: 485.2
1863 Male, age 55, unknown 494.2
2787 Female, age 85, both hemispheres 492.5
2727 Male, age 61, right hemisphere 492.1
2319 Female, age 91, both hemispheres 486.3
2109 Female, age 72, unknown 481.4
1968 Male, age 76, left hemisphere 480.6
2454 Male, age 74, left hemisphere 477.8
2115 Male, age 80, left hemisphere 476.4
Pontine raphe nucleus
nTPM: 483.0
2122 Female, age 85, midline 483.5
2853 Male, age 76, midline 482.5
Posteroventral cochlear nucleus
nTPM: 492.0
2135 Female, age 91, both hemispheres 512.0
2341 Male, age 80, both hemispheres 497.4
2371 Male, age 61, both hemispheres 491.4
2752 Female, age 85, both hemispheres 480.7
2070 Male, age 76, both hemispheres 478.3
Principal sensory trigeminal nucleus
nTPM: 480.5
2158 Male, age 61, both hemispheres 494.9
2367 Female, age 91, left hemisphere 482.6
2324 Male, age 76, both hemispheres 472.8
2008 Male, age 80, left hemisphere 471.8
Reticular pontine nucleus, caudal
nTPM: 478.0
2092 Male, age 76, both hemispheres 491.4
2559 Male, age 74, both hemispheres 488.9
2457 Female, age 91, both hemispheres 473.1
2332 Male, age 80, right hemisphere 458.8
Reticular pontine nucleus, oral
nTPM: 478.7
1939 Male, age 80, both hemispheres 491.6
2167 Male, age 76, both hemispheres 482.7
2366 Female, age 91, both hemispheres 481.3
2012 Female, age 85, both hemispheres 480.9
2361 Male, age 74, both hemispheres 457.1
Reticulotegmental nucleus
nTPM: 476.0
2452 Male, age 74, both hemispheres 479.9
2325 Male, age 76, both hemispheres 477.1
2322 Female, age 91, both hemispheres 474.2
2333 Male, age 80, both hemispheres 472.9
Spinal trigeminal nucleus, oral
nTPM: 473.3
2164 Male, age 80, both hemispheres 475.1
2737 Female, age 85, both hemispheres 472.7
1978 Male, age 76, both hemispheres 472.1
Subcoeruleus area
nTPM: 477.4
2369 Female, age 85, left hemisphere 493.8
2451 Male, age 74, both hemispheres 482.3
1958 Male, age 80, both hemispheres 478.7
2089 Male, age 76, left hemisphere 467.4
2323 Female, age 91, left hemisphere 464.6
Superior olive
nTPM: 479.3
2020 Male, age 76, both hemispheres 491.9
2561 Female, age 91, both hemispheres 480.8
1875 Female, age 85, both hemispheres 480.1
2364 Male, age 74, right hemisphere 479.2
2329 Male, age 80, right hemisphere 464.7
Superior vestibular nucleus
nTPM: 483.6
2015 Male, age 80, both hemispheres 492.6
2383 Male, age 74, both hemispheres 484.6
2061 Male, age 76, both hemispheres 473.6
Ventral periolivary nuclei
nTPM: 482.0
2023 Male, age 76, both hemispheres 497.9
2165 Male, age 80, both hemispheres 480.5
2794 Female, age 91, left hemisphere 475.1
2130 Female, age 85, both hemispheres 474.7
Ventrolateral tegmental area, A5 NE cell group
nTPM: 475.0
2359 Male, age 61, both hemispheres 482.1
2840 Female, age 85, both hemispheres 481.8
1959 Male, age 76, both hemispheres 477.4
2161 Male, age 80, both hemispheres 472.6
2456 Female, age 91, both hemispheres 472.0
2449 Male, age 74, both hemispheres 464.0

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 126.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 126.3
FF:10182-103D2 60 years, female 157.1
FF:10165-103B3 76 years, female 95.6
Pons
Scaled Tags Per Million: 103.9
FF:10033-101E6 18-54 years, mixed 103.9

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 137.8
Pig sample Sample description nTPM
Pons
nTPM: 137.8
Samples: 4

Max nTPM: 160.6
Min nTPM: 114.0
Sample A Female 132.4
Sample B Female 114.0
Sample C Male 144.3
Sample D Male 160.6

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.