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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:85.4 nTPM
HPA:85.4 nTPM
GTEx:151.5 nTPM
FANTOM5:7.5 Scaled Tags Per Million
Pig:144.3 nTPM
Mouse:374.5 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 85.4
Sample id Sample description nTPM
Amygdala
nTPM: 8.8
2517 Female, age 94, left hemisphere 23.5
1987 Female, age 91, left hemisphere 20.8
2514 Male, age 75, right hemisphere 0.0
2695 Female, age 67, right hemisphere 0.0
2814 Male, age 76, right hemisphere 0.0
Basal amygdala
nTPM: 85.4
2243 Female, age 91, right hemisphere 149.9
2685 Female, age 94, left hemisphere 139.8
2827 Female, age 67, right hemisphere 131.0
2609 Male, age 75, right hemisphere 51.9
2110 Male, age 80, left hemisphere 39.4
1955 Male, age 76, both hemispheres 0.0
Central amygdala
nTPM: 34.0
2826 Female, age 94, left hemisphere 102.2
2239 Male, age 80, left hemisphere 67.7
1905 Male, age 76, both hemispheres 0.0
2515 Male, age 75, right hemisphere 0.0
2701 Female, age 91, right hemisphere 0.0
Corticomedial amygdala
nTPM: 80.7
2535 Female, age 67, right hemisphere 155.7
2242 Female, age 91, right hemisphere 126.7
2829 Male, age 80, left hemisphere 103.3
2429 Female, age 94, left hemisphere 67.6
2428 Male, age 75, right hemisphere 31.1
2240 Male, age 76, both hemispheres 0.0
Lateral amygdala
nTPM: 40.2
2534 Female, age 94, left hemisphere 90.2
2256 Male, age 80, left hemisphere 69.1
2255 Female, age 91, right hemisphere 64.3
2830 Female, age 67, right hemisphere 17.4
1883 Male, age 76, both hemispheres 0.0
2516 Male, age 75, right hemisphere 0.0
Stria terminalis, bed nucleus
nTPM: 38.8
2486 Female, age 94, both hemispheres 69.0
1974 Female, age 91, both hemispheres 47.6
2201 Male, age 74, unknown 0.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 151.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 151.5
Samples: 152

Max nTPM: 362.3
Min nTPM: 3.2
Std nTPM: 79.0
Median nTPM: 145.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 362.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 320.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 316.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 312.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 302.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 296.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 296.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 289.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 287.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 281.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 280.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 275.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 271.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 271.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 271.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 269.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 265.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 260.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 256.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 254.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 240.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 238.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 236.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 235.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 231.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 231.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 230.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 229.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 229.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 226.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 223.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 221.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 218.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 217.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 214.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 211.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 209.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 209.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 208.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 207.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 206.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 205.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 205.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 202.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 201.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 198.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 198.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 195.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 194.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 193.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 192.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 192.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 185.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 184.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 182.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 181.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 181.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 180.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 176.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 174.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 172.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 171.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 170.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 170.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 169.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 167.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 159.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 158.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 154.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 152.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 149.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 148.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 147.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 147.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 146.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 146.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 144.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 143.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 140.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 139.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 130.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 128.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 127.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 127.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 127.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 124.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 124.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 122.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 122.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 122.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 118.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 118.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 113.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 113.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 110.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 109.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 108.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 108.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 107.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 104.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 103.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 103.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 102.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 101.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 101.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 100.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 100.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 96.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 94.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 94.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 93.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 90.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 88.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 87.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 86.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 83.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 82.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 81.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 80.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 78.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 77.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 77.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 76.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 76.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 74.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 74.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 73.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 72.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 67.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 64.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 64.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 61.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 61.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 60.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 59.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 56.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 56.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 55.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 55.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 49.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 48.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 47.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 43.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 41.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 37.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 35.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 32.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 21.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 18.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 17.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 4.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 3.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 7.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 7.5
FF:10151-102I7 76 years, female 7.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 144.3
Pig sample Sample description nTPM
Amygdala
nTPM: 144.2
Samples: 4

Max nTPM: 181.6
Min nTPM: 102.2
Sample A Female 181.6
Sample B Female 102.2
Sample C Male 151.3
Sample D Male 141.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 374.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 374.5
Samples: 4

Max nTPM: 434.6
Min nTPM: 319.2
Sample A Male 319.2
Sample B Male 389.0
Sample C Female 434.6
Sample D Female 355.2

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