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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:258.7 nTPM
HPA:258.7 nTPM
FANTOM5:82.0 Scaled Tags Per Million

PONS - HPA Brain RNA-seq
Max nTPM 258.7
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 247.5
2301 Female, age 85, both hemispheres 250.1
2090 Male, age 80, both hemispheres 249.5
2188 Female, age 91, both hemispheres 249.4
1984 Male, age 76, both hemispheres 240.9
Dorsal cochlear nucleus
nTPM: 248.5
2802 Male, age 74, right hemisphere 255.2
2187 Female, age 91, both hemispheres 251.7
2370 Male, age 61, both hemispheres 249.6
2378 Male, age 80, both hemispheres 244.6
2058 Male, age 76, both hemispheres 241.6
Dorsal tegmental nucleus
nTPM: 250.7
2083 Male, age 80, both hemispheres 254.3
2358 Male, age 61, both hemispheres 254.1
2326 Male, age 74, both hemispheres 249.4
1936 Male, age 76, left hemisphere 245.1
Dorsolateral tegmental area
nTPM: 251.5
2654 Male, age 80, both hemispheres 258.2
2337 Male, age 61, both hemispheres 256.6
2751 Female, age 85, both hemispheres 253.2
2360 Male, age 74, both hemispheres 247.1
2141 Male, age 76, both hemispheres 242.2
Kolliker-Fuse nucleus
nTPM: 250.9
2315 Male, age 76, right hemisphere 253.1
2793 Female, age 91, left hemisphere 252.7
2163 Male, age 80, both hemispheres 246.9
Lateral lemniscal nuclei
nTPM: 241.2
2169 Male, age 76, both hemispheres 245.4
2746 Female, age 85, left hemisphere 243.2
2453 Male, age 74, right hemisphere 240.3
2320 Female, age 91, left hemisphere 238.8
2036 Male, age 80, both hemispheres 238.3
Lateral parabrachial nucleus
nTPM: 252.5
2792 Male, age 76, both hemispheres 258.8
2790 Male, age 61, both hemispheres 252.6
2013 Male, age 80, both hemispheres 251.1
2139 Female, age 85, right hemisphere 247.4
Lateral vestibular nucleus
nTPM: 250.3
2311 Male, age 80, both hemispheres 254.2
2184 Male, age 76, both hemispheres 246.4
Locus coeruleus
nTPM: 243.1
2123 Female, age 91, both hemispheres 246.7
2162 Male, age 80, both hemispheres 244.0
2317 Female, age 72, unknown 243.0
1980 Male, age 76, both hemispheres 242.3
2014 Male, age 55, unknown 242.2
2788 Male, age 74, unknown 242.0
2720 Male, age 74, both hemispheres 241.3
Medial olivary nucleus
nTPM: 258.7
1943 Male, age 61, both hemispheres 262.1
2138 Female, age 91, both hemispheres 259.9
2851 Male, age 80, both hemispheres 257.1
1962 Male, age 76, both hemispheres 255.7
Medial parabrachial nucleus
nTPM: 252.5
2170 Female, age 91, both hemispheres 263.7
2156 Male, age 61, both hemispheres 251.2
2854 Male, age 80, both hemispheres 250.8
2463 Female, age 85, right hemisphere 249.8
2786 Male, age 76, both hemispheres 247.0
Medial periolivary nuclei
nTPM: 244.4
2791 Male, age 74, right hemisphere 252.7
2063 Male, age 76, both hemispheres 244.7
2081 Male, age 80, both hemispheres 243.8
2458 Female, age 91, both hemispheres 241.9
2171 Female, age 85, both hemispheres 238.9
Motor facial nucleus
nTPM: 244.0
2365 Male, age 74, right hemisphere 252.4
2126 Male, age 61, both hemispheres 249.1
2697 Female, age 85, both hemispheres 243.5
2062 Male, age 76, both hemispheres 242.3
2795 Female, age 91, both hemispheres 241.3
2327 Male, age 80, both hemispheres 235.2
Motor trigeminal nucleus
nTPM: 245.1
2335 Male, age 61, both hemispheres 254.5
2560 Male, age 74, both hemispheres 247.2
2309 Male, age 76, both hemispheres 243.9
2321 Female, age 91, both hemispheres 241.7
2079 Male, age 80, both hemispheres 238.3
Nuclei of the trapezoid body
nTPM: 241.5
1983 Male, age 76, both hemispheres 245.5
2159 Male, age 61, both hemispheres 245.2
2166 Male, age 80, both hemispheres 242.4
2735 Female, age 85, both hemispheres 237.8
2368 Female, age 91, both hemispheres 236.6
Paramedian reticular nucleus
nTPM: 246.9
2313 Male, age 61, both hemispheres 248.0
2050 Female, age 85, both hemispheres 247.6
2057 Male, age 80, both hemispheres 246.4
2052 Male, age 76, both hemispheres 245.5
Pontine nuclei
nTPM: 245.9
1863 Male, age 55, unknown 253.0
2109 Female, age 72, unknown 248.4
2454 Male, age 74, left hemisphere 248.4
1968 Male, age 76, left hemisphere 247.9
2319 Female, age 91, both hemispheres 244.4
2115 Male, age 80, left hemisphere 243.7
2787 Female, age 85, both hemispheres 243.0
2727 Male, age 61, right hemisphere 238.8
Pontine raphe nucleus
nTPM: 243.5
2853 Male, age 76, midline 245.3
2122 Female, age 85, midline 241.7
Posteroventral cochlear nucleus
nTPM: 249.7
2135 Female, age 91, both hemispheres 252.6
2371 Male, age 61, both hemispheres 252.4
2341 Male, age 80, both hemispheres 251.7
2070 Male, age 76, both hemispheres 247.1
2752 Female, age 85, both hemispheres 244.4
Principal sensory trigeminal nucleus
nTPM: 244.4
2158 Male, age 61, both hemispheres 247.1
2324 Male, age 76, both hemispheres 245.8
2367 Female, age 91, left hemisphere 244.5
2008 Male, age 80, left hemisphere 240.0
Reticular pontine nucleus, caudal
nTPM: 244.2
2559 Male, age 74, both hemispheres 249.6
2092 Male, age 76, both hemispheres 246.8
2457 Female, age 91, both hemispheres 243.9
2332 Male, age 80, right hemisphere 236.5
Reticular pontine nucleus, oral
nTPM: 246.0
1939 Male, age 80, both hemispheres 251.3
2167 Male, age 76, both hemispheres 249.4
2366 Female, age 91, both hemispheres 245.9
2012 Female, age 85, both hemispheres 242.9
2361 Male, age 74, both hemispheres 240.7
Reticulotegmental nucleus
nTPM: 242.9
2322 Female, age 91, both hemispheres 245.1
2452 Male, age 74, both hemispheres 244.2
2333 Male, age 80, both hemispheres 241.8
2325 Male, age 76, both hemispheres 240.5
Spinal trigeminal nucleus, oral
nTPM: 243.7
2164 Male, age 80, both hemispheres 246.3
1978 Male, age 76, both hemispheres 242.8
2737 Female, age 85, both hemispheres 241.9
Subcoeruleus area
nTPM: 245.9
2369 Female, age 85, left hemisphere 252.8
1958 Male, age 80, both hemispheres 248.8
2323 Female, age 91, left hemisphere 245.9
2451 Male, age 74, both hemispheres 241.9
2089 Male, age 76, left hemisphere 240.0
Superior olive
nTPM: 246.5
2364 Male, age 74, right hemisphere 256.9
2020 Male, age 76, both hemispheres 246.6
2561 Female, age 91, both hemispheres 246.1
1875 Female, age 85, both hemispheres 242.2
2329 Male, age 80, right hemisphere 240.7
Superior vestibular nucleus
nTPM: 253.3
2383 Male, age 74, both hemispheres 258.2
2015 Male, age 80, both hemispheres 254.8
2061 Male, age 76, both hemispheres 247.0
Ventral periolivary nuclei
nTPM: 242.7
2023 Male, age 76, both hemispheres 249.0
2165 Male, age 80, both hemispheres 241.9
2794 Female, age 91, left hemisphere 240.5
2130 Female, age 85, both hemispheres 239.4
Ventrolateral tegmental area, A5 NE cell group
nTPM: 245.7
2359 Male, age 61, both hemispheres 251.5
2840 Female, age 85, both hemispheres 249.1
2449 Male, age 74, both hemispheres 244.9
1959 Male, age 76, both hemispheres 244.1
2161 Male, age 80, both hemispheres 243.8
2456 Female, age 91, both hemispheres 241.1

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 82.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 82.0
FF:10165-103B3 76 years, female 87.8
FF:10182-103D2 60 years, female 76.2
Pons
Scaled Tags Per Million: 71.1
FF:10033-101E6 18-54 years, mixed 71.1

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.