MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:36.9 nTPM
HPA:36.9 nTPM
GTEx:33.4 nTPM
FANTOM5:37.7 Scaled Tags Per Million
Pig:36.9 nTPM
Mouse:34.4 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.4
2586 Male, age 75, left hemisphere 39.2
1870 Female, age 42, unknown 38.1
2411 Female, age 72, unknown 35.7
2828 Female, age 72, unknown 35.7
1833 Male, age 53, unknown 35.6
2019 Male, age 18, unknown 34.7
1830 Male, age 51, unknown 34.6
2666 Male, age 74, left hemisphere 33.8
2219 Male, age 76, both hemispheres 33.6
1827 Male, age 72, unknown 33.3
Dorsal raphe nucleus
nTPM: 35.3
2298 Female, age 72, unknown 36.0
2047 Male, age 72, unknown 35.9
1828 Male, age 53, unknown 35.6
2016 Female, age 72, unknown 35.4
2750 Male, age 76, both hemispheres 33.8
Inferior colliculus
nTPM: 34.9
2097 Female, age 72, unknown 35.7
1890 Male, age 53, unknown 34.7
1848 Female, age 42, unknown 34.6
2849 Male, age 72, unknown 34.6
Median raphe nucleus
nTPM: 32.9
2220 Male, age 76, midline 32.9
Pedunculopontine tegmental nucleus
nTPM: 33.9
1921 Female, age 85, both hemispheres 34.4
2334 Male, age 80, both hemispheres 34.3
2338 Male, age 61, both hemispheres 32.9
Periaquaductal grey, anterior
nTPM: 34.4
2502 Female, age 75, unknown 35.6
1947 Male, age 18, unknown 34.3
1795 Male, age 51, unknown 33.4
Periaquaductal grey, dorsal
nTPM: 34.4
2464 Female, age 72, unknown 35.5
1831 Male, age 72, unknown 35.1
1840 Male, age 53, unknown 34.8
2850 Male, age 76, both hemispheres 32.2
Periaquaductal grey, lateral
nTPM: 32.9
2140 Male, age 76, both hemispheres 33.6
2053 Male, age 18, unknown 33.4
2272 Male, age 74, both hemispheres 31.7
Pretectal area
nTPM: 34.2
1815 Male, age 53, unknown 35.5
1817 Female, age 42, unknown 35.2
2825 Male, age 18, unknown 35.0
2007 Male, age 72, unknown 34.9
2316 Male, age 76, right hemisphere 34.5
2667 Female, age 75, unknown 34.4
1816 Male, age 51, unknown 34.3
2273 Male, age 74, both hemispheres 33.6
2224 Female, age 72, unknown 33.5
1944 Female, age 72, unknown 32.8
2407 Male, age 75, both hemispheres 32.8
Red nucleus
nTPM: 36.9
1821 Female, age 72, unknown 38.7
1865 Male, age 51, unknown 38.2
1904 Male, age 53, unknown 38.2
1954 Female, age 42, unknown 37.7
2227 Male, age 72, unknown 37.6
2769 Male, age 72, unknown 37.3
2503 Female, age 72, unknown 37.2
2588 Male, age 74, left hemisphere 36.5
2823 Male, age 76, right hemisphere 35.8
2725 Female, age 75, unknown 35.6
2785 Male, age 18, unknown 35.5
2584 Male, age 75, left hemisphere 34.7
Substantia nigra
nTPM: 34.8
2665 Male, age 74, both hemispheres 36.5
1851 Male, age 51, unknown 36.1
1889 Female, age 72, unknown 36.1
2583 Male, age 75, right hemisphere 35.9
2699 Male, age 18, unknown 35.9
2590 Female, age 75, unknown 34.7
1916 Female, age 42, unknown 34.3
2241 Male, age 72, unknown 34.0
2409 Female, age 72, unknown 32.8
1941 Male, age 53, unknown 32.1
Superior colliculus
nTPM: 35.0
1839 Male, age 51, unknown 36.2
1913 Female, age 42, unknown 36.2
2664 Male, age 75, both hemispheres 35.4
1895 Male, age 76, right hemisphere 35.1
1995 Male, age 72, unknown 35.1
1796 Male, age 53, unknown 35.0
2668 Female, age 75, unknown 34.8
2261 Male, age 18, unknown 34.3
2587 Male, age 74, left hemisphere 34.1
2087 Female, age 72, unknown 33.6
Ventral tegmental area
nTPM: 35.3
2410 Female, age 72, unknown 37.6
1915 Female, age 42, unknown 36.2
2021 Male, age 53, unknown 34.9
2218 Male, age 76, both hemispheres 34.9
2223 Female, age 72, unknown 34.8
1942 Male, age 51, unknown 33.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.4
Samples: 139

Max nTPM: 65.5
Min nTPM: 13.2
Std nTPM: 8.3
Median nTPM: 31.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 65.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 56.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 52.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 51.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 51.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 48.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 48.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 48.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 48.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 46.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 46.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.7
FF:10158-103A5 76 years, female 37.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.9
Pig sample Sample description nTPM
Midbrain
nTPM: 34.6
Samples: 4

Max nTPM: 54.3
Min nTPM: 25.1
Sample A Female 54.3
Sample B Female 33.0
Sample C Male 26.0
Sample D Male 25.1
Periaqueductal gray
nTPM: 30.3
Samples: 3

Max nTPM: 33.3
Min nTPM: 27.8
Sample B Female 27.8
Sample C Male 33.3
Sample D Male 29.7
Substantia nigra
nTPM: 36.9
Samples: 4

Max nTPM: 44.5
Min nTPM: 33.8
Sample A Female 44.5
Sample B Female 33.8
Sample C Male 35.2
Sample D Male 34.2
Superior colliculi
nTPM: 34.5
Samples: 4

Max nTPM: 41.2
Min nTPM: 29.4
Sample A Female 41.2
Sample B Female 32.5
Sample C Male 29.4
Sample D Male 34.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.4
Samples: 4

Max nTPM: 37.9
Min nTPM: 31.9
Sample A Male 31.9
Sample B Male 32.0
Sample C Female 35.9
Sample D Female 37.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
79677345 Antisense, RP_071204_02_A03, Mouse strain C57BL/6J (56 days, male) 1.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.