MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:129.4 nTPM
HPA:129.4 nTPM
GTEx:174.2 nTPM
FANTOM5:365.6 Scaled Tags Per Million
Pig:376.1 nTPM
Mouse:219.9 nTPM
Allen mouse:21.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 129.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 105.8
2666 Male, age 74, left hemisphere 144.1
1827 Male, age 72, unknown 133.4
2019 Male, age 18, unknown 117.7
2586 Male, age 75, left hemisphere 115.5
2828 Female, age 72, unknown 103.4
1833 Male, age 53, unknown 92.4
2411 Female, age 72, unknown 91.5
2219 Male, age 76, both hemispheres 90.8
1870 Female, age 42, unknown 87.1
1830 Male, age 51, unknown 82.0
Dorsal raphe nucleus
nTPM: 79.1
2298 Female, age 72, unknown 113.4
2750 Male, age 76, both hemispheres 90.9
2047 Male, age 72, unknown 85.4
1828 Male, age 53, unknown 75.2
2016 Female, age 72, unknown 30.6
Inferior colliculus
nTPM: 107.0
2849 Male, age 72, unknown 122.2
1848 Female, age 42, unknown 120.7
2097 Female, age 72, unknown 111.8
1890 Male, age 53, unknown 73.2
Median raphe nucleus
nTPM: 129.4
2220 Male, age 76, midline 129.4
Pedunculopontine tegmental nucleus
nTPM: 92.7
1921 Female, age 85, both hemispheres 113.8
2334 Male, age 80, both hemispheres 112.6
2338 Male, age 61, both hemispheres 51.7
Periaquaductal grey, anterior
nTPM: 125.6
2502 Female, age 75, unknown 131.8
1947 Male, age 18, unknown 127.3
1795 Male, age 51, unknown 117.5
Periaquaductal grey, dorsal
nTPM: 61.9
2464 Female, age 72, unknown 71.7
1840 Male, age 53, unknown 71.0
1831 Male, age 72, unknown 56.8
2850 Male, age 76, both hemispheres 48.2
Periaquaductal grey, lateral
nTPM: 47.0
2053 Male, age 18, unknown 56.9
2140 Male, age 76, both hemispheres 48.8
2272 Male, age 74, both hemispheres 35.4
Pretectal area
nTPM: 129.0
1816 Male, age 51, unknown 192.5
1817 Female, age 42, unknown 186.5
2667 Female, age 75, unknown 185.0
1944 Female, age 72, unknown 182.9
2007 Male, age 72, unknown 170.6
1815 Male, age 53, unknown 138.1
2224 Female, age 72, unknown 94.9
2407 Male, age 75, both hemispheres 90.5
2825 Male, age 18, unknown 88.6
2316 Male, age 76, right hemisphere 51.6
2273 Male, age 74, both hemispheres 37.3
Red nucleus
nTPM: 84.8
2785 Male, age 18, unknown 117.7
2584 Male, age 75, left hemisphere 110.8
1821 Female, age 72, unknown 99.5
2588 Male, age 74, left hemisphere 90.8
1954 Female, age 42, unknown 87.2
2227 Male, age 72, unknown 86.1
2823 Male, age 76, right hemisphere 82.9
1865 Male, age 51, unknown 80.9
2769 Male, age 72, unknown 79.0
1904 Male, age 53, unknown 70.0
2503 Female, age 72, unknown 66.3
2725 Female, age 75, unknown 46.2
Substantia nigra
nTPM: 85.7
1941 Male, age 53, unknown 149.9
1889 Female, age 72, unknown 143.9
1916 Female, age 42, unknown 128.4
1851 Male, age 51, unknown 86.3
2665 Male, age 74, both hemispheres 85.3
2583 Male, age 75, right hemisphere 76.7
2241 Male, age 72, unknown 71.3
2699 Male, age 18, unknown 43.5
2409 Female, age 72, unknown 38.7
2590 Female, age 75, unknown 33.5
Superior colliculus
nTPM: 119.3
2668 Female, age 75, unknown 178.3
2087 Female, age 72, unknown 155.9
2664 Male, age 75, both hemispheres 143.2
1796 Male, age 53, unknown 142.4
2261 Male, age 18, unknown 136.3
1895 Male, age 76, right hemisphere 126.6
1839 Male, age 51, unknown 104.7
1913 Female, age 42, unknown 77.0
2587 Male, age 74, left hemisphere 76.5
1995 Male, age 72, unknown 51.9
Ventral tegmental area
nTPM: 90.9
2218 Male, age 76, both hemispheres 119.8
2410 Female, age 72, unknown 109.8
2223 Female, age 72, unknown 101.3
1915 Female, age 42, unknown 91.0
1942 Male, age 51, unknown 74.7
2021 Male, age 53, unknown 48.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 174.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 174.2
Samples: 139

Max nTPM: 647.4
Min nTPM: 65.5
Std nTPM: 86.5
Median nTPM: 155.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 647.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 526.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 407.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 376.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 373.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 356.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 319.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 313.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 294.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 292.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 290.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 365.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 365.6
FF:10158-103A5 76 years, female 365.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 376.1
Pig sample Sample description nTPM
Midbrain
nTPM: 345.7
Samples: 4

Max nTPM: 477.2
Min nTPM: 229.0
Sample A Female 269.6
Sample B Female 229.0
Sample C Male 477.2
Sample D Male 407.0
Periaqueductal gray
nTPM: 249.6
Samples: 3

Max nTPM: 292.9
Min nTPM: 225.1
Sample B Female 225.1
Sample C Male 292.9
Sample D Male 230.7
Substantia nigra
nTPM: 268.4
Samples: 4

Max nTPM: 345.5
Min nTPM: 187.5
Sample A Female 345.5
Sample B Female 187.5
Sample C Male 338.3
Sample D Male 202.2
Superior colliculi
nTPM: 376.1
Samples: 4

Max nTPM: 485.0
Min nTPM: 175.0
Sample A Female 417.4
Sample B Female 175.0
Sample C Male 485.0
Sample D Male 427.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 219.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 219.9
Samples: 4

Max nTPM: 240.8
Min nTPM: 196.4
Sample A Male 196.4
Sample B Male 218.2
Sample C Female 240.8
Sample D Female 224.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 21.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.3
385775 Antisense, RP_040625_01_E03, Mouse strain C57BL/6J (56 days, male) 21.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.