MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:348.2 nTPM
HPA:348.2 nTPM
GTEx:441.2 nTPM
FANTOM5:10.9 Scaled Tags Per Million
Pig:173.6 nTPM
Mouse:219.5 nTPM
Allen mouse:16.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 348.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 337.0
2666 Male, age 74, left hemisphere 353.8
1870 Female, age 42, unknown 348.2
2411 Female, age 72, unknown 345.3
1830 Male, age 51, unknown 339.0
1833 Male, age 53, unknown 337.8
2586 Male, age 75, left hemisphere 334.2
2219 Male, age 76, both hemispheres 332.0
1827 Male, age 72, unknown 327.2
2828 Female, age 72, unknown 327.2
2019 Male, age 18, unknown 325.1
Dorsal raphe nucleus
nTPM: 324.1
2016 Female, age 72, unknown 333.3
2750 Male, age 76, both hemispheres 328.5
1828 Male, age 53, unknown 324.7
2047 Male, age 72, unknown 323.1
2298 Female, age 72, unknown 310.8
Inferior colliculus
nTPM: 335.2
1890 Male, age 53, unknown 343.2
2849 Male, age 72, unknown 339.8
1848 Female, age 42, unknown 339.0
2097 Female, age 72, unknown 318.9
Median raphe nucleus
nTPM: 334.3
2220 Male, age 76, midline 334.3
Pedunculopontine tegmental nucleus
nTPM: 335.1
2338 Male, age 61, both hemispheres 342.6
2334 Male, age 80, both hemispheres 340.6
1921 Female, age 85, both hemispheres 322.0
Periaquaductal grey, anterior
nTPM: 330.5
2502 Female, age 75, unknown 336.4
1947 Male, age 18, unknown 334.3
1795 Male, age 51, unknown 320.9
Periaquaductal grey, dorsal
nTPM: 333.1
2850 Male, age 76, both hemispheres 342.0
1840 Male, age 53, unknown 333.6
2464 Female, age 72, unknown 328.5
1831 Male, age 72, unknown 328.3
Periaquaductal grey, lateral
nTPM: 325.5
2053 Male, age 18, unknown 339.0
2140 Male, age 76, both hemispheres 332.0
2272 Male, age 74, both hemispheres 305.7
Pretectal area
nTPM: 324.4
2825 Male, age 18, unknown 338.0
1815 Male, age 53, unknown 336.6
2407 Male, age 75, both hemispheres 333.0
2316 Male, age 76, right hemisphere 328.4
1817 Female, age 42, unknown 326.0
2224 Female, age 72, unknown 322.8
2007 Male, age 72, unknown 321.4
1944 Female, age 72, unknown 319.8
1816 Male, age 51, unknown 316.9
2667 Female, age 75, unknown 316.9
2273 Male, age 74, both hemispheres 308.8
Red nucleus
nTPM: 348.2
2503 Female, age 72, unknown 375.6
1865 Male, age 51, unknown 364.0
2588 Male, age 74, left hemisphere 363.2
2584 Male, age 75, left hemisphere 351.6
1904 Male, age 53, unknown 347.7
2725 Female, age 75, unknown 345.6
2769 Male, age 72, unknown 341.9
2227 Male, age 72, unknown 340.8
1954 Female, age 42, unknown 340.6
1821 Female, age 72, unknown 339.9
2823 Male, age 76, right hemisphere 338.1
2785 Male, age 18, unknown 329.6
Substantia nigra
nTPM: 340.2
2590 Female, age 75, unknown 354.9
2409 Female, age 72, unknown 352.9
2699 Male, age 18, unknown 351.3
2241 Male, age 72, unknown 346.3
2665 Male, age 74, both hemispheres 345.9
2583 Male, age 75, right hemisphere 338.6
1851 Male, age 51, unknown 337.7
1889 Female, age 72, unknown 336.7
1941 Male, age 53, unknown 323.8
1916 Female, age 42, unknown 313.6
Superior colliculus
nTPM: 333.5
1913 Female, age 42, unknown 353.7
1995 Male, age 72, unknown 352.0
2587 Male, age 74, left hemisphere 351.9
1839 Male, age 51, unknown 336.4
1895 Male, age 76, right hemisphere 332.9
1796 Male, age 53, unknown 325.2
2668 Female, age 75, unknown 323.3
2664 Male, age 75, both hemispheres 322.2
2087 Female, age 72, unknown 319.1
2261 Male, age 18, unknown 318.6
Ventral tegmental area
nTPM: 335.4
2223 Female, age 72, unknown 342.1
2410 Female, age 72, unknown 339.1
1942 Male, age 51, unknown 335.7
2021 Male, age 53, unknown 334.7
1915 Female, age 42, unknown 334.1
2218 Male, age 76, both hemispheres 326.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 441.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 441.2
Samples: 139

Max nTPM: 853.5
Min nTPM: 211.0
Std nTPM: 137.3
Median nTPM: 410.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 853.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 824.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 787.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 745.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 730.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 728.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 727.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 716.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 713.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 696.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 681.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.9
FF:10158-103A5 76 years, female 10.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 173.6
Pig sample Sample description nTPM
Midbrain
nTPM: 173.6
Samples: 4

Max nTPM: 223.8
Min nTPM: 148.2
Sample A Female 223.8
Sample B Female 169.9
Sample C Male 152.5
Sample D Male 148.2
Periaqueductal gray
nTPM: 153.2
Samples: 3

Max nTPM: 166.1
Min nTPM: 133.9
Sample B Female 159.7
Sample C Male 166.1
Sample D Male 133.9
Substantia nigra
nTPM: 153.0
Samples: 4

Max nTPM: 166.8
Min nTPM: 144.4
Sample A Female 166.8
Sample B Female 144.4
Sample C Male 153.3
Sample D Male 147.4
Superior colliculi
nTPM: 169.9
Samples: 4

Max nTPM: 181.3
Min nTPM: 163.0
Sample A Female 181.3
Sample B Female 167.3
Sample C Male 163.0
Sample D Male 167.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 219.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 219.5
Samples: 4

Max nTPM: 228.2
Min nTPM: 209.8
Sample A Male 224.7
Sample B Male 215.2
Sample C Female 228.2
Sample D Female 209.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.4
71232800 Antisense, RP_050503_02_A03, Mouse strain C57BL/6J (56 days, male) 16.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.