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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:55.7 nTPM
GTEx:57.1 nTPM
FANTOM5:67.3 Scaled Tags Per Million
Pig:26.2 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 55.7
Sample id Sample description nTPM
Putamen
nTPM: 55.7
2482 Female, age 94, left hemisphere 64.1
1838 Male, age 80, right hemisphere 55.4
1937 Female, age 91, right hemisphere 55.4
1829 Male, age 74, unknown 54.2
2466 Female, age 79, unknown 54.0
2489 Female, age 72, unknown 53.5
2647 Male, age 75, left hemisphere 53.4

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 57.1
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 57.1
Samples: 205

Max nTPM: 99.5
Min nTPM: 33.9
Std nTPM: 9.6
Median nTPM: 56.5
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 99.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 88.8
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 80.5
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 79.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 78.3
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 78.3
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 77.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 76.6
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 76.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 76.3
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 74.5
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 74.4
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 73.7
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 72.6
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 72.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 72.0
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 71.3
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 71.1
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 71.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 71.0
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 70.6
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 70.4
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 69.6
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 69.0
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 67.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 66.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 66.7
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 66.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 66.4
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 66.0
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 65.7
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 65.5
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 65.3
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 65.2
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 65.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 65.1
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 65.0
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 64.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 64.8
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 64.8
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 64.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 64.4
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 64.3
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 64.2
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 64.0
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 63.3
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 63.1
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 63.0
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 62.8
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 62.5
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 62.4
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 62.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 61.9
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 61.2
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 61.2
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 61.1
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 60.9
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 60.8
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 60.4
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 60.2
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 60.2
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 60.0
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 60.0
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 59.8
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 59.8
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 59.6
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 59.6
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 59.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 59.2
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 59.1
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 59.0
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 59.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 58.9
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 58.9
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 58.8
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 58.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 58.7
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 58.7
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 58.5
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 58.5
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 58.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 58.3
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 58.2
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 58.1
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 58.1
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 57.9
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 57.9
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 57.9
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 57.6
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 57.5
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 57.5
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 57.5
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 57.5
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 57.4
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 57.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 57.2
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 57.2
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 57.0
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 56.9
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 56.9
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 56.8
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 56.6
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 56.5
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 56.5
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 56.4
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 56.4
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 56.2
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 56.1
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 56.1
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 56.0
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 55.9
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 55.9
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 55.7
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 55.7
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 55.6
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 55.5
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 55.4
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 55.1
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 54.9
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 54.8
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 54.6
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 54.3
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 54.2
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 54.1
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 54.0
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 53.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 53.9
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 53.7
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 53.6
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 53.5
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 53.3
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 53.3
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 53.0
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 52.6
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 52.6
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 52.5
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 52.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 52.5
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 52.3
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 52.2
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 52.2
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 52.2
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 52.2
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 52.0
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 51.9
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 51.8
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 51.2
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 51.2
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 51.1
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 51.0
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 51.0
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 51.0
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 50.9
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 50.7
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 50.6
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 50.5
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 50.5
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 50.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 50.3
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 50.2
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 50.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 50.0
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 50.0
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 49.7
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 49.4
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 49.3
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 49.2
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 49.1
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 48.9
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 48.8
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 48.7
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 48.7
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 48.2
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 48.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 48.1
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 48.1
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 48.0
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 47.6
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 47.5
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 47.5
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 47.0
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 46.9
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 46.9
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 46.7
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 46.5
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 46.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 45.9
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 45.8
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 45.7
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 45.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 45.0
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 44.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 43.0
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 42.9
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 42.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 42.4
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 42.4
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 41.8
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 41.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 41.5
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 40.1
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 40.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 37.9
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 34.5
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 33.9
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 67.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 67.3
FF:10176-103C5 60 years, female 67.3

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 26.2
Pig sample Sample description nTPM
Putamen
nTPM: 26.2
Samples: 4

Max nTPM: 29.5
Min nTPM: 22.2
Sample A Female 26.7
Sample B Female 22.2
Sample C Male 29.5
Sample D Male 26.5

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