MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:56.1 nTPM
HPA:56.1 nTPM
GTEx:59.7 nTPM
FANTOM5:294.3 Scaled Tags Per Million
Pig:166.3 nTPM
Mouse:74.7 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.2
1870 Female, age 42, unknown 57.8
2411 Female, age 72, unknown 53.6
1830 Male, age 51, unknown 52.0
2019 Male, age 18, unknown 50.6
1833 Male, age 53, unknown 50.3
2666 Male, age 74, left hemisphere 43.3
2586 Male, age 75, left hemisphere 41.9
2828 Female, age 72, unknown 41.4
1827 Male, age 72, unknown 40.6
2219 Male, age 76, both hemispheres 40.6
Dorsal raphe nucleus
nTPM: 53.9
2750 Male, age 76, both hemispheres 59.9
2016 Female, age 72, unknown 53.1
2298 Female, age 72, unknown 53.0
1828 Male, age 53, unknown 52.8
2047 Male, age 72, unknown 50.4
Inferior colliculus
nTPM: 44.0
1848 Female, age 42, unknown 45.1
1890 Male, age 53, unknown 44.8
2097 Female, age 72, unknown 44.1
2849 Male, age 72, unknown 42.2
Median raphe nucleus
nTPM: 56.1
2220 Male, age 76, midline 56.1
Pedunculopontine tegmental nucleus
nTPM: 51.4
2338 Male, age 61, both hemispheres 55.1
2334 Male, age 80, both hemispheres 54.3
1921 Female, age 85, both hemispheres 44.8
Periaquaductal grey, anterior
nTPM: 46.3
1947 Male, age 18, unknown 51.4
2502 Female, age 75, unknown 45.3
1795 Male, age 51, unknown 42.2
Periaquaductal grey, dorsal
nTPM: 46.5
2850 Male, age 76, both hemispheres 54.5
1840 Male, age 53, unknown 44.1
1831 Male, age 72, unknown 44.0
2464 Female, age 72, unknown 43.3
Periaquaductal grey, lateral
nTPM: 47.7
2272 Male, age 74, both hemispheres 52.8
2140 Male, age 76, both hemispheres 47.1
2053 Male, age 18, unknown 43.2
Pretectal area
nTPM: 44.5
2273 Male, age 74, both hemispheres 53.2
2224 Female, age 72, unknown 50.1
2667 Female, age 75, unknown 46.9
1817 Female, age 42, unknown 45.8
1815 Male, age 53, unknown 45.6
2825 Male, age 18, unknown 43.6
2007 Male, age 72, unknown 43.2
2316 Male, age 76, right hemisphere 42.6
1944 Female, age 72, unknown 40.9
1816 Male, age 51, unknown 38.8
2407 Male, age 75, both hemispheres 38.2
Red nucleus
nTPM: 51.1
1821 Female, age 72, unknown 57.8
1865 Male, age 51, unknown 55.7
1954 Female, age 42, unknown 55.6
2769 Male, age 72, unknown 53.9
1904 Male, age 53, unknown 53.7
2227 Male, age 72, unknown 52.6
2823 Male, age 76, right hemisphere 51.9
2503 Female, age 72, unknown 48.6
2785 Male, age 18, unknown 48.4
2725 Female, age 75, unknown 48.1
2584 Male, age 75, left hemisphere 44.4
2588 Male, age 74, left hemisphere 42.1
Substantia nigra
nTPM: 49.5
2241 Male, age 72, unknown 55.3
2409 Female, age 72, unknown 53.1
1851 Male, age 51, unknown 51.7
1916 Female, age 42, unknown 51.5
1889 Female, age 72, unknown 51.3
2590 Female, age 75, unknown 49.4
2699 Male, age 18, unknown 48.2
2583 Male, age 75, right hemisphere 47.3
1941 Male, age 53, unknown 47.2
2665 Male, age 74, both hemispheres 40.1
Superior colliculus
nTPM: 44.7
1913 Female, age 42, unknown 53.5
1995 Male, age 72, unknown 50.0
2587 Male, age 74, left hemisphere 49.5
1839 Male, age 51, unknown 45.3
2668 Female, age 75, unknown 44.2
2261 Male, age 18, unknown 43.5
1895 Male, age 76, right hemisphere 41.7
1796 Male, age 53, unknown 41.2
2087 Female, age 72, unknown 41.2
2664 Male, age 75, both hemispheres 36.8
Ventral tegmental area
nTPM: 53.6
2223 Female, age 72, unknown 62.6
2410 Female, age 72, unknown 53.3
2021 Male, age 53, unknown 53.1
1942 Male, age 51, unknown 51.6
2218 Male, age 76, both hemispheres 51.3
1915 Female, age 42, unknown 50.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 59.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.7
Samples: 139

Max nTPM: 115.8
Min nTPM: 32.4
Std nTPM: 14.9
Median nTPM: 56.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 115.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 113.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 101.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 96.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 95.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 94.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 92.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 91.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 87.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 82.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 81.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 294.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 294.3
FF:10158-103A5 76 years, female 294.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 166.3
Pig sample Sample description nTPM
Midbrain
nTPM: 101.3
Samples: 4

Max nTPM: 152.8
Min nTPM: 64.2
Sample A Female 152.8
Sample B Female 112.7
Sample C Male 75.5
Sample D Male 64.2
Periaqueductal gray
nTPM: 92.6
Samples: 3

Max nTPM: 107.4
Min nTPM: 81.7
Sample B Female 81.7
Sample C Male 107.4
Sample D Male 88.8
Substantia nigra
nTPM: 166.3
Samples: 4

Max nTPM: 228.6
Min nTPM: 101.9
Sample A Female 197.5
Sample B Female 137.2
Sample C Male 228.6
Sample D Male 101.9
Superior colliculi
nTPM: 92.1
Samples: 4

Max nTPM: 103.8
Min nTPM: 82.3
Sample A Female 103.8
Sample B Female 93.4
Sample C Male 82.3
Sample D Male 89.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 74.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 74.7
Samples: 4

Max nTPM: 79.2
Min nTPM: 70.8
Sample A Male 70.8
Sample B Male 74.9
Sample C Female 79.2
Sample D Female 73.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
68443208 Antisense, RP_050111_01_E10, Mouse strain C57BL/6J (56 days, male) 4.4
75749771 Antisense, RP_060518_01_B01, Mouse strain C57BL/6J (56 days, male) 2.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.