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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:26.7 nTPM
HPA:26.7 nTPM
GTEx:26.8 nTPM
FANTOM5:97.5 Scaled Tags Per Million
Pig:18.8 nTPM
Mouse:17.2 nTPM
Allen mouse:6.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 26.7
Sample id Sample description nTPM
Amygdala
nTPM: 21.1
2514 Male, age 75, right hemisphere 22.7
2814 Male, age 76, right hemisphere 21.7
1987 Female, age 91, left hemisphere 21.5
2517 Female, age 94, left hemisphere 21.0
2695 Female, age 67, right hemisphere 18.8
Basal amygdala
nTPM: 22.6
2243 Female, age 91, right hemisphere 26.0
2110 Male, age 80, left hemisphere 22.7
1955 Male, age 76, both hemispheres 22.4
2685 Female, age 94, left hemisphere 22.3
2609 Male, age 75, right hemisphere 21.4
2827 Female, age 67, right hemisphere 20.6
Central amygdala
nTPM: 20.5
2239 Male, age 80, left hemisphere 23.1
2701 Female, age 91, right hemisphere 22.7
1905 Male, age 76, both hemispheres 20.3
2515 Male, age 75, right hemisphere 19.3
2826 Female, age 94, left hemisphere 17.3
Corticomedial amygdala
nTPM: 23.7
2429 Female, age 94, left hemisphere 25.3
2242 Female, age 91, right hemisphere 24.7
2240 Male, age 76, both hemispheres 24.4
2829 Male, age 80, left hemisphere 24.0
2535 Female, age 67, right hemisphere 23.2
2428 Male, age 75, right hemisphere 20.8
Lateral amygdala
nTPM: 19.8
1883 Male, age 76, both hemispheres 22.5
2255 Female, age 91, right hemisphere 22.3
2256 Male, age 80, left hemisphere 21.1
2516 Male, age 75, right hemisphere 18.9
2534 Female, age 94, left hemisphere 17.8
2830 Female, age 67, right hemisphere 16.0
Stria terminalis, bed nucleus
nTPM: 26.7
2486 Female, age 94, both hemispheres 28.1
1974 Female, age 91, both hemispheres 26.5
2201 Male, age 74, unknown 25.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 26.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 26.8
Samples: 152

Max nTPM: 63.8
Min nTPM: 11.7
Std nTPM: 7.8
Median nTPM: 25.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 63.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 63.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 47.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 47.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 45.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 45.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 42.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 40.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 40.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 39.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 38.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 37.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 37.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 37.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 36.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 36.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 35.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 35.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 34.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 33.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 33.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 33.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 33.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 33.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 32.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 32.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 32.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 31.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 31.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 31.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 31.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 31.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 30.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 30.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 30.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 29.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 29.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 29.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 29.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 29.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 28.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 28.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 28.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 28.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 28.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 28.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 28.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 28.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 28.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 28.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 28.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 27.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 27.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 27.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 27.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 27.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 27.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 27.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 27.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 27.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 27.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 27.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 26.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 26.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 26.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 26.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 26.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 26.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 26.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 25.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 25.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 25.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 25.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 25.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 25.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 25.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 25.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 25.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 25.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 25.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 25.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 24.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 24.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 24.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 24.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 24.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 24.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 24.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 24.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 24.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 24.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 24.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 23.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 23.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 23.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 23.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 23.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 23.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 23.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 23.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 23.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 23.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 23.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 23.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 23.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 23.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 23.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 23.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 23.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 22.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 22.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 22.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 22.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 22.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 22.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 22.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 22.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 22.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 22.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 22.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 22.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 21.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 21.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 21.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 20.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 20.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 20.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 20.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 19.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 19.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 19.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 19.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 19.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 19.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 19.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 19.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 19.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 19.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 19.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 18.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 17.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 17.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 17.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 17.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 16.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 16.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 16.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 15.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 14.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 13.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 13.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 11.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 97.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 97.5
FF:10151-102I7 76 years, female 97.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 18.8
Pig sample Sample description nTPM
Amygdala
nTPM: 18.8
Samples: 4

Max nTPM: 24.0
Min nTPM: 15.0
Sample A Female 24.0
Sample B Female 20.9
Sample C Male 15.0
Sample D Male 15.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 17.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 17.2
Samples: 4

Max nTPM: 19.2
Min nTPM: 14.3
Sample A Male 16.6
Sample B Male 19.2
Sample C Female 14.3
Sample D Female 18.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 6.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.0
68269052 Antisense, RP_041208_01_G03, Mouse strain C57BL/6J (56 days, male) 6.0

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