MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:228.0 nTPM
HPA:228.0 nTPM
GTEx:219.1 nTPM
FANTOM5:318.8 Scaled Tags Per Million
Pig:102.9 nTPM
Mouse:154.2 nTPM
Allen mouse:6.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 228.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 210.8
2666 Male, age 74, left hemisphere 241.8
2586 Male, age 75, left hemisphere 220.0
2411 Female, age 72, unknown 217.7
1830 Male, age 51, unknown 214.6
2019 Male, age 18, unknown 211.8
1870 Female, age 42, unknown 208.8
1833 Male, age 53, unknown 208.3
2828 Female, age 72, unknown 203.8
1827 Male, age 72, unknown 194.8
2219 Male, age 76, both hemispheres 186.5
Dorsal raphe nucleus
nTPM: 194.5
2750 Male, age 76, both hemispheres 210.6
2016 Female, age 72, unknown 199.2
2047 Male, age 72, unknown 196.1
1828 Male, age 53, unknown 195.3
2298 Female, age 72, unknown 171.2
Inferior colliculus
nTPM: 181.3
1890 Male, age 53, unknown 190.1
1848 Female, age 42, unknown 183.7
2849 Male, age 72, unknown 179.2
2097 Female, age 72, unknown 172.4
Median raphe nucleus
nTPM: 185.5
2220 Male, age 76, midline 185.5
Pedunculopontine tegmental nucleus
nTPM: 190.9
2334 Male, age 80, both hemispheres 196.5
2338 Male, age 61, both hemispheres 189.7
1921 Female, age 85, both hemispheres 186.4
Periaquaductal grey, anterior
nTPM: 193.7
2502 Female, age 75, unknown 204.5
1947 Male, age 18, unknown 195.0
1795 Male, age 51, unknown 181.5
Periaquaductal grey, dorsal
nTPM: 180.8
2464 Female, age 72, unknown 191.5
1831 Male, age 72, unknown 185.9
2850 Male, age 76, both hemispheres 175.1
1840 Male, age 53, unknown 170.8
Periaquaductal grey, lateral
nTPM: 175.0
2053 Male, age 18, unknown 188.9
2272 Male, age 74, both hemispheres 169.0
2140 Male, age 76, both hemispheres 167.1
Pretectal area
nTPM: 187.1
1815 Male, age 53, unknown 209.9
2007 Male, age 72, unknown 199.5
2407 Male, age 75, both hemispheres 199.5
1817 Female, age 42, unknown 193.9
2316 Male, age 76, right hemisphere 193.4
2825 Male, age 18, unknown 185.2
1816 Male, age 51, unknown 184.7
1944 Female, age 72, unknown 183.4
2273 Male, age 74, both hemispheres 174.5
2224 Female, age 72, unknown 170.4
2667 Female, age 75, unknown 164.4
Red nucleus
nTPM: 228.0
2588 Male, age 74, left hemisphere 265.2
2503 Female, age 72, unknown 246.9
1904 Male, age 53, unknown 239.2
1865 Male, age 51, unknown 234.0
1821 Female, age 72, unknown 228.9
2725 Female, age 75, unknown 225.6
2769 Male, age 72, unknown 218.9
2823 Male, age 76, right hemisphere 218.1
1954 Female, age 42, unknown 218.0
2785 Male, age 18, unknown 215.9
2227 Male, age 72, unknown 214.2
2584 Male, age 75, left hemisphere 211.2
Substantia nigra
nTPM: 205.9
2409 Female, age 72, unknown 219.7
1851 Male, age 51, unknown 216.0
2699 Male, age 18, unknown 207.9
2590 Female, age 75, unknown 207.4
2665 Male, age 74, both hemispheres 207.4
2583 Male, age 75, right hemisphere 205.2
2241 Male, age 72, unknown 203.8
1889 Female, age 72, unknown 200.2
1916 Female, age 42, unknown 198.1
1941 Male, age 53, unknown 193.5
Superior colliculus
nTPM: 201.3
2587 Male, age 74, left hemisphere 219.9
2668 Female, age 75, unknown 219.9
1995 Male, age 72, unknown 213.1
1913 Female, age 42, unknown 212.5
2664 Male, age 75, both hemispheres 197.8
1839 Male, age 51, unknown 196.5
1895 Male, age 76, right hemisphere 193.6
1796 Male, age 53, unknown 189.0
2261 Male, age 18, unknown 187.5
2087 Female, age 72, unknown 183.5
Ventral tegmental area
nTPM: 196.5
2410 Female, age 72, unknown 208.3
2223 Female, age 72, unknown 199.4
1915 Female, age 42, unknown 197.9
1942 Male, age 51, unknown 196.7
2021 Male, age 53, unknown 189.5
2218 Male, age 76, both hemispheres 187.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 219.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 219.1
Samples: 139

Max nTPM: 530.8
Min nTPM: 89.5
Std nTPM: 98.7
Median nTPM: 202.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 530.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 530.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 498.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 484.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 457.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 455.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 439.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 427.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 403.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 395.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 372.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 318.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 318.8
FF:10158-103A5 76 years, female 318.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 102.9
Pig sample Sample description nTPM
Midbrain
nTPM: 102.9
Samples: 4

Max nTPM: 141.4
Min nTPM: 75.3
Sample A Female 141.4
Sample B Female 99.3
Sample C Male 95.6
Sample D Male 75.3
Periaqueductal gray
nTPM: 74.4
Samples: 3

Max nTPM: 77.1
Min nTPM: 71.8
Sample B Female 77.1
Sample C Male 74.2
Sample D Male 71.8
Substantia nigra
nTPM: 98.3
Samples: 4

Max nTPM: 111.5
Min nTPM: 73.0
Sample A Female 111.5
Sample B Female 73.0
Sample C Male 99.3
Sample D Male 109.4
Superior colliculi
nTPM: 85.0
Samples: 4

Max nTPM: 100.5
Min nTPM: 53.3
Sample A Female 92.2
Sample B Female 53.3
Sample C Male 100.5
Sample D Male 94.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 154.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 154.3
Samples: 4

Max nTPM: 160.6
Min nTPM: 146.4
Sample A Male 146.4
Sample B Male 155.6
Sample C Female 160.6
Sample D Female 154.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.9
69627027 Antisense, RP_050428_01_G03, Mouse strain C57BL/6J (56 days, male) 6.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.