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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:139.8 nTPM
HPA:139.8 nTPM
GTEx:142.2 nTPM
FANTOM5:359.4 Scaled Tags Per Million
Pig:85.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 139.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 132.8
2565 Male, age 75, midline 160.2
2048 Male, age 55, midline 132.3
1981 Female, age 72, midline 131.7
2816 Male, age 47, midline 126.0
2194 Female, age 79, both hemispheres 113.9
Cervical spinal cord, dorsal horn
nTPM: 129.9
2173 Female, age 72, unknown 152.0
2296 Male, age 66, both hemispheres 135.8
2069 Male, age 47, both hemispheres 127.5
2721 Male, age 90, both hemispheres 125.2
1877 Male, age 55, unknown 123.9
2297 Male, age 75, both hemispheres 114.9
Cervical spinal cord, ventral horn
nTPM: 139.8
2809 Male, age 90, both hemispheres 162.0
2098 Female, age 72, unknown 155.7
2480 Male, age 75, both hemispheres 142.6
2295 Male, age 66, both hemispheres 137.7
2820 Female, age 79, both hemispheres 124.1
2068 Male, age 55, unknown 116.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 142.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 142.2
Samples: 159

Max nTPM: 250.2
Min nTPM: 42.8
Std nTPM: 43.3
Median nTPM: 138.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 250.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 243.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 242.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 242.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 236.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 225.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 221.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 218.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 217.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 216.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 216.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 215.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 206.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 203.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 202.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 201.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 200.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 199.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 199.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 196.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 193.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 192.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 190.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 188.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 186.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 183.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 183.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 183.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 180.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 180.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 179.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 178.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 176.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 175.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 174.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 174.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 173.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 173.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 172.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 171.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 171.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 170.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 170.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 168.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 167.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 167.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 167.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 166.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 166.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 165.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 162.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 162.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 162.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 161.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 159.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 158.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 158.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 158.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 158.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 156.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 155.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 154.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 153.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 153.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 152.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 151.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 151.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 151.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 151.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 148.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 146.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 143.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 142.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 142.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 141.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 139.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 139.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 139.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 139.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 138.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 137.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 137.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 137.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 134.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 134.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 134.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 134.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 132.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 131.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 131.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 130.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 129.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 129.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 129.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 128.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 127.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 127.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 125.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 125.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 125.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 125.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 122.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 122.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 122.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 122.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 121.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 120.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 119.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 119.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 118.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 118.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 117.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 117.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 115.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 115.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 115.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 114.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 113.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 113.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 112.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 109.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 109.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 108.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 107.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 106.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 105.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 105.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 105.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 103.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 102.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 99.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 99.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 97.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 96.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 95.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 95.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 94.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 93.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 91.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 91.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 89.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 89.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 88.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 87.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 86.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 84.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 83.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 81.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 78.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 77.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 76.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 74.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 71.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 66.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 63.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 63.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 62.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 58.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 42.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 359.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 359.4
FF:10181-103D1 60 years, female 414.3
FF:10159-103A6 76 years, female 304.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 85.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 85.4
Samples: 4

Max nTPM: 114.3
Min nTPM: 72.8
Sample A Female 73.7
Sample B Female 80.6
Sample C Male 114.3
Sample D Male 72.8
Ventral spinal cord
nTPM: 85.5
Samples: 4

Max nTPM: 91.5
Min nTPM: 81.9
Sample A Female 86.1
Sample B Female 82.4
Sample C Male 81.9
Sample D Male 91.5

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