MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:144.0 nTPM
HPA:144.0 nTPM
GTEx:109.0 nTPM
FANTOM5:231.6 Scaled Tags Per Million
Pig:65.9 nTPM
Mouse:60.3 nTPM
Allen mouse:12.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 144.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 131.0
2586 Male, age 75, left hemisphere 182.2
1830 Male, age 51, unknown 145.6
1870 Female, age 42, unknown 140.8
1833 Male, age 53, unknown 138.8
2019 Male, age 18, unknown 132.9
2828 Female, age 72, unknown 124.5
2411 Female, age 72, unknown 123.7
2666 Male, age 74, left hemisphere 117.1
1827 Male, age 72, unknown 113.7
2219 Male, age 76, both hemispheres 90.7
Dorsal raphe nucleus
nTPM: 118.2
2016 Female, age 72, unknown 125.6
1828 Male, age 53, unknown 120.0
2047 Male, age 72, unknown 119.7
2750 Male, age 76, both hemispheres 118.3
2298 Female, age 72, unknown 107.4
Inferior colliculus
nTPM: 112.4
1848 Female, age 42, unknown 119.0
1890 Male, age 53, unknown 115.0
2849 Male, age 72, unknown 112.7
2097 Female, age 72, unknown 103.0
Median raphe nucleus
nTPM: 119.1
2220 Male, age 76, midline 119.1
Pedunculopontine tegmental nucleus
nTPM: 118.6
2338 Male, age 61, both hemispheres 129.1
2334 Male, age 80, both hemispheres 118.0
1921 Female, age 85, both hemispheres 108.5
Periaquaductal grey, anterior
nTPM: 111.6
2502 Female, age 75, unknown 115.6
1947 Male, age 18, unknown 113.6
1795 Male, age 51, unknown 105.4
Periaquaductal grey, dorsal
nTPM: 122.7
2850 Male, age 76, both hemispheres 159.7
2464 Female, age 72, unknown 117.2
1831 Male, age 72, unknown 114.7
1840 Male, age 53, unknown 99.0
Periaquaductal grey, lateral
nTPM: 129.2
2140 Male, age 76, both hemispheres 151.5
2053 Male, age 18, unknown 124.2
2272 Male, age 74, both hemispheres 111.8
Pretectal area
nTPM: 111.8
2316 Male, age 76, right hemisphere 130.8
2667 Female, age 75, unknown 119.4
1815 Male, age 53, unknown 118.2
2407 Male, age 75, both hemispheres 116.0
2825 Male, age 18, unknown 115.5
1817 Female, age 42, unknown 112.6
2273 Male, age 74, both hemispheres 110.2
2224 Female, age 72, unknown 106.4
1944 Female, age 72, unknown 105.4
2007 Male, age 72, unknown 100.7
1816 Male, age 51, unknown 94.1
Red nucleus
nTPM: 144.0
1865 Male, age 51, unknown 160.0
1954 Female, age 42, unknown 156.0
2227 Male, age 72, unknown 154.7
2769 Male, age 72, unknown 154.4
1904 Male, age 53, unknown 154.3
1821 Female, age 72, unknown 153.2
2584 Male, age 75, left hemisphere 138.9
2823 Male, age 76, right hemisphere 138.3
2785 Male, age 18, unknown 134.1
2725 Female, age 75, unknown 133.0
2503 Female, age 72, unknown 127.5
2588 Male, age 74, left hemisphere 123.5
Substantia nigra
nTPM: 123.9
2699 Male, age 18, unknown 141.1
2590 Female, age 75, unknown 134.3
1851 Male, age 51, unknown 130.6
2583 Male, age 75, right hemisphere 127.7
2665 Male, age 74, both hemispheres 122.2
2409 Female, age 72, unknown 120.4
1916 Female, age 42, unknown 117.4
1941 Male, age 53, unknown 117.4
1889 Female, age 72, unknown 116.5
2241 Male, age 72, unknown 111.0
Superior colliculus
nTPM: 118.8
1995 Male, age 72, unknown 147.5
1913 Female, age 42, unknown 147.0
2664 Male, age 75, both hemispheres 127.0
1839 Male, age 51, unknown 120.0
2587 Male, age 74, left hemisphere 113.7
1796 Male, age 53, unknown 113.3
1895 Male, age 76, right hemisphere 109.3
2668 Female, age 75, unknown 104.0
2087 Female, age 72, unknown 103.8
2261 Male, age 18, unknown 102.8
Ventral tegmental area
nTPM: 128.5
2223 Female, age 72, unknown 154.9
2021 Male, age 53, unknown 132.8
1942 Male, age 51, unknown 121.1
1915 Female, age 42, unknown 121.0
2218 Male, age 76, both hemispheres 120.9
2410 Female, age 72, unknown 120.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 109.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 109.0
Samples: 139

Max nTPM: 498.1
Min nTPM: 15.3
Std nTPM: 67.2
Median nTPM: 88.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 498.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 491.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 351.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 248.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 246.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 242.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 217.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 216.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 213.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 206.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 198.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 231.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 231.6
FF:10158-103A5 76 years, female 231.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 65.9
Pig sample Sample description nTPM
Midbrain
nTPM: 58.9
Samples: 4

Max nTPM: 125.0
Min nTPM: 28.7
Sample A Female 125.0
Sample B Female 47.9
Sample C Male 34.0
Sample D Male 28.7
Periaqueductal gray
nTPM: 41.5
Samples: 3

Max nTPM: 43.9
Min nTPM: 36.6
Sample B Female 43.9
Sample C Male 36.6
Sample D Male 43.9
Substantia nigra
nTPM: 59.1
Samples: 4

Max nTPM: 68.3
Min nTPM: 45.7
Sample A Female 62.1
Sample B Female 60.4
Sample C Male 45.7
Sample D Male 68.3
Superior colliculi
nTPM: 65.9
Samples: 4

Max nTPM: 98.0
Min nTPM: 45.0
Sample A Female 69.7
Sample B Female 98.0
Sample C Male 45.0
Sample D Male 50.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 60.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.3
Samples: 4

Max nTPM: 63.0
Min nTPM: 55.6
Sample A Male 63.0
Sample B Male 55.6
Sample C Female 61.2
Sample D Female 61.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.5
72182992 Antisense, RP_050927_01_G10, Mouse strain C57BL/6J (56 days, male) 12.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.