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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:186.3 nTPM
HPA:186.3 nTPM
GTEx:206.6 nTPM
FANTOM5:228.5 Scaled Tags Per Million
Pig:150.0 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 186.3
Sample id Sample description nTPM
Amygdala
nTPM: 166.9
2514 Male, age 75, right hemisphere 174.2
1987 Female, age 91, left hemisphere 171.1
2695 Female, age 67, right hemisphere 164.1
2517 Female, age 94, left hemisphere 163.7
2814 Male, age 76, right hemisphere 161.4
Basal amygdala
nTPM: 163.4
2609 Male, age 75, right hemisphere 176.3
2243 Female, age 91, right hemisphere 176.1
2685 Female, age 94, left hemisphere 164.7
2110 Male, age 80, left hemisphere 163.5
1955 Male, age 76, both hemispheres 156.8
2827 Female, age 67, right hemisphere 143.3
Central amygdala
nTPM: 162.0
2701 Female, age 91, right hemisphere 167.1
2239 Male, age 80, left hemisphere 164.0
2826 Female, age 94, left hemisphere 163.4
2515 Male, age 75, right hemisphere 161.0
1905 Male, age 76, both hemispheres 154.4
Corticomedial amygdala
nTPM: 166.5
2829 Male, age 80, left hemisphere 176.1
2428 Male, age 75, right hemisphere 174.5
2242 Female, age 91, right hemisphere 173.3
2429 Female, age 94, left hemisphere 166.2
2240 Male, age 76, both hemispheres 159.3
2535 Female, age 67, right hemisphere 149.7
Lateral amygdala
nTPM: 158.8
2534 Female, age 94, left hemisphere 168.9
1883 Male, age 76, both hemispheres 166.0
2516 Male, age 75, right hemisphere 166.0
2255 Female, age 91, right hemisphere 159.6
2256 Male, age 80, left hemisphere 150.5
2830 Female, age 67, right hemisphere 141.6
Stria terminalis, bed nucleus
nTPM: 186.3
1974 Female, age 91, both hemispheres 202.0
2486 Female, age 94, both hemispheres 182.4
2201 Male, age 74, unknown 174.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 206.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 206.6
Samples: 152

Max nTPM: 610.2
Min nTPM: 97.2
Std nTPM: 69.2
Median nTPM: 190.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 610.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 465.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 391.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 380.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 377.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 359.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 354.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 345.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 343.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 307.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 306.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 297.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 296.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 295.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 293.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 285.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 283.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 278.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 278.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 275.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 270.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 266.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 261.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 255.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 254.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 249.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 248.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 248.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 247.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 243.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 242.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 242.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 241.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 238.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 235.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 233.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 231.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 231.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 230.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 228.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 228.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 227.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 226.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 224.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 224.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 224.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 224.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 223.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 220.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 219.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 219.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 219.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 218.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 213.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 212.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 211.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 211.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 208.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 207.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 206.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 206.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 205.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 205.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 204.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 202.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 202.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 201.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 199.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 198.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 195.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 194.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 193.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 192.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 192.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 191.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 190.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 190.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 189.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 188.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 187.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 186.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 186.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 186.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 186.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 185.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 185.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 184.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 183.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 182.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 181.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 181.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 181.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 181.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 181.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 180.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 180.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 179.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 178.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 177.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 177.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 176.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 174.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 174.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 174.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 172.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 171.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 170.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 170.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 169.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 169.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 167.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 166.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 166.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 165.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 161.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 161.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 159.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 158.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 157.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 156.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 155.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 154.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 154.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 153.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 150.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 150.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 145.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 145.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 145.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 144.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 142.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 142.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 141.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 139.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 139.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 139.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 138.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 137.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 136.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 136.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 136.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 132.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 131.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 131.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 130.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 129.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 128.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 127.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 118.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 116.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 113.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 97.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 228.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 228.5
FF:10151-102I7 76 years, female 228.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 150.0
Pig sample Sample description nTPM
Amygdala
nTPM: 150.0
Samples: 4

Max nTPM: 170.0
Min nTPM: 127.4
Sample A Female 170.0
Sample B Female 145.6
Sample C Male 156.9
Sample D Male 127.4

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