MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:192.5 nTPM
HPA:192.5 nTPM
GTEx:251.9 nTPM
FANTOM5:119.1 Scaled Tags Per Million
Pig:235.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 192.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 172.7
2411 Female, age 72, unknown 189.3
1833 Male, age 53, unknown 180.9
1870 Female, age 42, unknown 180.7
2219 Male, age 76, both hemispheres 174.3
1830 Male, age 51, unknown 173.1
2019 Male, age 18, unknown 171.1
2586 Male, age 75, left hemisphere 168.8
2666 Male, age 74, left hemisphere 168.0
1827 Male, age 72, unknown 167.2
2828 Female, age 72, unknown 153.5
Dorsal raphe nucleus
nTPM: 192.5
1828 Male, age 53, unknown 221.6
2047 Male, age 72, unknown 202.6
2298 Female, age 72, unknown 194.7
2016 Female, age 72, unknown 172.5
2750 Male, age 76, both hemispheres 171.2
Inferior colliculus
nTPM: 188.4
1848 Female, age 42, unknown 195.6
2849 Male, age 72, unknown 189.8
2097 Female, age 72, unknown 187.3
1890 Male, age 53, unknown 180.8
Median raphe nucleus
nTPM: 186.7
2220 Male, age 76, midline 186.7
Pedunculopontine tegmental nucleus
nTPM: 186.7
2334 Male, age 80, both hemispheres 191.2
1921 Female, age 85, both hemispheres 189.0
2338 Male, age 61, both hemispheres 180.0
Periaquaductal grey, anterior
nTPM: 173.6
1947 Male, age 18, unknown 186.3
2502 Female, age 75, unknown 170.8
1795 Male, age 51, unknown 163.7
Periaquaductal grey, dorsal
nTPM: 171.3
2850 Male, age 76, both hemispheres 177.8
1840 Male, age 53, unknown 176.2
2464 Female, age 72, unknown 169.3
1831 Male, age 72, unknown 162.1
Periaquaductal grey, lateral
nTPM: 169.0
2272 Male, age 74, both hemispheres 173.3
2140 Male, age 76, both hemispheres 168.3
2053 Male, age 18, unknown 165.2
Pretectal area
nTPM: 166.7
2825 Male, age 18, unknown 184.1
2224 Female, age 72, unknown 178.0
2667 Female, age 75, unknown 176.9
1817 Female, age 42, unknown 170.4
2273 Male, age 74, both hemispheres 168.3
2007 Male, age 72, unknown 168.0
2316 Male, age 76, right hemisphere 164.9
1816 Male, age 51, unknown 157.8
1944 Female, age 72, unknown 157.5
2407 Male, age 75, both hemispheres 156.4
1815 Male, age 53, unknown 151.9
Red nucleus
nTPM: 179.6
1821 Female, age 72, unknown 223.8
2227 Male, age 72, unknown 194.6
2769 Male, age 72, unknown 194.6
1954 Female, age 42, unknown 186.5
2823 Male, age 76, right hemisphere 181.1
1865 Male, age 51, unknown 175.2
2503 Female, age 72, unknown 173.3
2588 Male, age 74, left hemisphere 168.6
2725 Female, age 75, unknown 168.6
1904 Male, age 53, unknown 167.5
2785 Male, age 18, unknown 161.5
2584 Male, age 75, left hemisphere 160.4
Substantia nigra
nTPM: 190.1
1916 Female, age 42, unknown 208.5
1941 Male, age 53, unknown 205.6
2241 Male, age 72, unknown 200.9
1851 Male, age 51, unknown 194.4
2699 Male, age 18, unknown 191.3
2409 Female, age 72, unknown 190.9
2665 Male, age 74, both hemispheres 186.6
1889 Female, age 72, unknown 183.6
2590 Female, age 75, unknown 176.6
2583 Male, age 75, right hemisphere 162.6
Superior colliculus
nTPM: 162.0
1895 Male, age 76, right hemisphere 190.7
1839 Male, age 51, unknown 182.5
2587 Male, age 74, left hemisphere 175.3
2668 Female, age 75, unknown 168.7
1796 Male, age 53, unknown 163.2
2664 Male, age 75, both hemispheres 155.4
2087 Female, age 72, unknown 153.1
2261 Male, age 18, unknown 152.3
1913 Female, age 42, unknown 140.1
1995 Male, age 72, unknown 138.4
Ventral tegmental area
nTPM: 184.8
1915 Female, age 42, unknown 203.2
2410 Female, age 72, unknown 196.6
2218 Male, age 76, both hemispheres 188.2
2223 Female, age 72, unknown 178.4
1942 Male, age 51, unknown 175.8
2021 Male, age 53, unknown 166.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 251.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 251.9
Samples: 139

Max nTPM: 696.7
Min nTPM: 91.3
Std nTPM: 101.0
Median nTPM: 231.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 696.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 553.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 502.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 494.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 486.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 474.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 463.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 462.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 444.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 420.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 414.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 119.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 119.1
FF:10158-103A5 76 years, female 119.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 235.9
Pig sample Sample description nTPM
Midbrain
nTPM: 224.4
Samples: 4

Max nTPM: 240.7
Min nTPM: 209.7
Sample A Female 240.7
Sample B Female 209.7
Sample C Male 224.9
Sample D Male 222.2
Periaqueductal gray
nTPM: 215.2
Samples: 3

Max nTPM: 263.3
Min nTPM: 188.6
Sample B Female 188.6
Sample C Male 263.3
Sample D Male 193.8
Substantia nigra
nTPM: 222.9
Samples: 4

Max nTPM: 276.4
Min nTPM: 175.7
Sample A Female 242.0
Sample B Female 175.7
Sample C Male 276.4
Sample D Male 197.5
Superior colliculi
nTPM: 235.9
Samples: 4

Max nTPM: 268.0
Min nTPM: 166.3
Sample A Female 265.9
Sample B Female 166.3
Sample C Male 268.0
Sample D Male 243.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.