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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:188.0 nTPM
HPA:188.0 nTPM
FANTOM5:123.3 Scaled Tags Per Million
Pig:237.2 nTPM

THALAMUS - HPA Brain RNA-seq
Max nTPM 188.0
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 156.7
2032 Female, age 42, unknown 164.8
2497 Male, age 66, unknown 158.0
2396 Male, age 61, right hemisphere 147.4
Centromedial thalamic nucleus
nTPM: 160.2
2401 Male, age 76, right hemisphere 178.7
2279 Female, age 85, left hemisphere 141.6
Habenula
nTPM: 173.1
2203 Male, age 61, left hemisphere 180.2
1957 Male, age 80, both hemispheres 174.8
2276 Male, age 66, unknown 171.6
2252 Male, age 62, unknown 166.0
Lateral geniculate body
nTPM: 180.3
2106 Female, age 67, right hemisphere 201.0
2035 Female, age 72, unknown 191.1
1953 Male, age 62, unknown 190.9
2399 Male, age 61, left hemisphere 189.3
2857 Male, age 74, right hemisphere 172.3
2841 Male, age 80, both hemispheres 170.8
2575 Female, age 94, right hemisphere 164.1
2659 Male, age 66, unknown 163.1
Lateral thalamic nuclei
nTPM: 163.3
2765 Female, age 67, both hemispheres 175.5
2573 Female, age 94, left hemisphere 169.2
2577 Male, age 74, both hemispheres 166.1
1903 Male, age 76, left hemisphere 157.8
2661 Female, age 72, unknown 148.1
Medial dorsal thalamic nucleus
nTPM: 166.9
2572 Female, age 94, right hemisphere 185.3
2498 Male, age 66, unknown 183.2
2492 Male, age 75, right hemisphere 172.7
2039 Female, age 72, unknown 169.7
2402 Female, age 67, both hemispheres 168.8
1810 Male, age 48, unknown 168.2
2576 Male, age 74, both hemispheres 165.9
1971 Male, age 61, right hemisphere 164.2
1859 Male, age 76, both hemispheres 164.0
2026 Male, age 62, unknown 161.4
1930 Female, age 42, unknown 160.3
2283 Male, age 80, right hemisphere 159.1
2660 Female, age 72, unknown 146.4
Medial geniculate body
nTPM: 161.2
2650 Female, age 94, left hemisphere 173.7
2657 Male, age 74, right hemisphere 166.4
2049 Male, age 76, both hemispheres 164.2
2571 Male, age 75, right hemisphere 162.5
1811 Female, age 42, unknown 156.8
2207 Male, age 80, right hemisphere 154.2
2217 Female, age 72, unknown 150.2
Nucleus reuniens
nTPM: 172.3
2212 Female, age 67, left hemisphere 190.7
2205 Male, age 80, left hemisphere 172.2
2210 Female, age 85, left hemisphere 153.9
Nucleus rhomboideus
nTPM: 159.6
2206 Male, age 80, both hemispheres 164.6
2213 Female, age 67, left hemisphere 161.3
2280 Female, age 85, left hemisphere 152.8
Posterior thalamic nucleus
nTPM: 174.9
2649 Female, age 94, both hemispheres 203.2
2655 Male, age 74, right hemisphere 167.7
2495 Female, age 67, right hemisphere 165.8
2266 Male, age 76, right hemisphere 162.7
Pulvinar
nTPM: 170.2
1972 Male, age 62, unknown 194.7
2398 Male, age 61, left hemisphere 184.0
1932 Male, age 80, right hemisphere 177.0
2496 Female, age 67, right hemisphere 173.5
2724 Male, age 74, right hemisphere 170.3
2499 Male, age 66, unknown 167.6
1899 Female, age 42, unknown 162.4
1929 Male, age 48, unknown 161.7
2214 Male, age 76, right hemisphere 160.3
2582 Female, age 72, unknown 150.8
Subthalamic nucleus
nTPM: 188.0
2124 Male, age 62, unknown 202.6
2658 Male, age 74, both hemispheres 195.0
2406 Female, age 72, unknown 192.5
2779 Female, age 42, unknown 191.4
2282 Male, age 61, both hemispheres 188.4
2056 Female, age 72, unknown 188.2
2275 Male, age 66, unknown 176.1
2216 Male, age 48, unknown 170.1
Ventral posterolateral thalamic nucleus
nTPM: 168.7
2740 Male, age 76, right hemisphere 195.7
2397 Male, age 61, right hemisphere 176.5
2570 Male, age 75, right hemisphere 168.1
2578 Male, age 74, both hemispheres 166.2
2197 Male, age 80, both hemispheres 159.1
2581 Female, age 72, unknown 146.7
Ventral posteromedial thalamic nucleus
nTPM: 160.5
2281 Male, age 75, right hemisphere 166.5
2653 Male, age 74, both hemispheres 166.3
2202 Male, age 61, left hemisphere 164.4
2758 Male, age 80, both hemispheres 154.0
2127 Male, age 76, right hemisphere 151.1
Ventral thalamic nuclei
nTPM: 163.6
1845 Male, age 48, unknown 185.2
1860 Male, age 76, both hemispheres 166.8
2580 Male, age 66, unknown 166.1
2291 Female, age 72, unknown 162.6
2858 Female, age 72, unknown 160.4
2285 Male, age 62, unknown 158.8
1912 Female, age 42, unknown 157.9
2652 Male, age 74, left hemisphere 157.9
2204 Male, age 80, both hemispheres 156.6
Ventromedial nucleus
nTPM: 187.9
1982 Female, age 72, unknown 193.1
1822 Female, age 42, unknown 182.6
Zona incerta
nTPM: 167.6
2822 Male, age 74, right hemisphere 183.0
2403 Male, age 62, unknown 177.1
2215 Male, age 66, unknown 172.6
2208 Male, age 80, right hemisphere 159.3
2663 Female, age 72, unknown 146.0

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 123.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 123.3
FF:10154-103A1 76 years, female 123.3

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 237.2
Pig sample Sample description nTPM
Thalamus
nTPM: 237.2
Samples: 4

Max nTPM: 264.9
Min nTPM: 208.9
Sample A Female 257.4
Sample B Female 208.9
Sample C Male 264.9
Sample D Male 217.5

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