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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:142.7 nTPM
HPA:91.2 nTPM
GTEx:142.7 nTPM
FANTOM5:153.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA038602Antibody HPA057592Antibody CAB006329
Glandular cells HighMediumMedium







SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 91.2
overview
Male, age 65
Small intestine sample 232
nTPM: 92
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 98.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 86.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 88

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 142.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 142.7
Samples: 187

Max nTPM: 264.4
Min nTPM: 87.0
Std nTPM: 33.2
Median nTPM: 136.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 264.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 259.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 253.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 227.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 218.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 216.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 212.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 209.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 209.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 203.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 202.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 202.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 193.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 192.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 192.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 191.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 190.3
GTEX-1192X-2526-SM-59868 50-59 years, male 190.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 188.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 187.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 187.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 186.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 185.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 184.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 183.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 183.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 182.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 181.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 181.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 180.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 179.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 179.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 174.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 173.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 173.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 172.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 170.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 169.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 168.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 166.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 165.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 165.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 164.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 160.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 159.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 159.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 159.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 159.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 158.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 158.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 156.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 154.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 154.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 154.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 153.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 153.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 152.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 152.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 150.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 150.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 150.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 150.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 149.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 148.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 148.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 148.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 148.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 147.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 147.6
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 147.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 146.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 145.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 145.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 144.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 143.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 143.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 143.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 142.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 141.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 141.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 140.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 140.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 140.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 139.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 139.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 139.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 139.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 138.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 137.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 137.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 137.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 137.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 137.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 136.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 135.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 135.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 135.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 134.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 134.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 134.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 133.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 133.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 132.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 132.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 132.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 131.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 131.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 130.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 130.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 130.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 129.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 129.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 129.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 128.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 128.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 127.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 127.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 127.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 127.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 126.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 125.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 125.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 125.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 124.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 123.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 123.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 123.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 123.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 122.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 122.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 121.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 120.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 120.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 119.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 119.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 118.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 118.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 118.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 118.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 118.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 118.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 117.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 116.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 116.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 116.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 116.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 115.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 115.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 115.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 115.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 115.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 115.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 114.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 114.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 114.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 114.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 113.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 113.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 113.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 113.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 112.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 111.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 111.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 110.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 110.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 109.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 108.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 108.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 108.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 108.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 107.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 106.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 105.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 102.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 101.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 100.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 100.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 100.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 99.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 97.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 96.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 96.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 94.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 91.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 90.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 88.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 87.0
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 153.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 153.7
FF:10024-101D6 15,40,85 years, mixed 153.7

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