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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:9.3 nTPM
HPA:7.1 nTPM
GTEx:9.3 nTPM
FANTOM5:13.9 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 7.1
overview
Male, age 65
Small intestine sample 232
nTPM: 6.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 5.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 7.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 8.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 9.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 9.3
Samples: 187

Max nTPM: 31.1
Min nTPM: 3.5
Std nTPM: 3.9
Median nTPM: 8.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 31.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 22.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 20.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 19.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 19.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 18.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 17.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 17.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 17.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 17.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 16.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 16.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 15.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 15.6
GTEX-1192X-2526-SM-59868 50-59 years, male 15.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 15.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 14.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 14.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 14.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 14.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 14.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 14.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 13.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 13.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 13.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 13.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 12.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 12.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 12.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 12.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 12.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 12.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 12.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 12.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 12.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 11.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 11.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 11.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 11.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 11.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 11.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 11.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 11.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 11.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 11.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 11.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 11.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 11.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 11.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 11.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 11.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 10.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 10.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 10.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 10.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 10.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 10.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 10.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 10.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 10.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 10.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 10.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 10.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 10.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 10.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 10.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 9.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 9.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 9.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 9.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 9.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 9.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 9.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 9.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 9.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 9.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 9.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 9.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 9.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 9.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 9.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 9.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 9.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 9.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 9.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 9.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 9.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 9.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 8.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 8.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 8.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 8.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 8.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 8.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 8.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 8.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 8.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 8.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 8.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 8.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 8.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 8.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 8.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 8.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 8.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 8.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 8.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 8.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 8.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 7.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 7.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 7.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 7.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 7.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 7.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 7.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 7.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 7.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 7.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 7.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 7.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 7.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 7.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 7.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 7.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 6.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 6.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 6.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 6.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 6.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 6.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 6.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 6.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 6.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 6.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 6.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 6.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 6.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 6.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 6.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 6.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 6.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 6.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 6.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 6.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 6.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 6.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 6.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 6.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 6.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 5.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 5.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 5.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 5.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 5.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 5.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 5.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 5.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 5.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 5.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 5.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 5.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 5.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 5.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 5.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 5.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 5.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 5.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 5.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 5.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 5.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 5.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 5.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 5.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 5.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 4.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 4.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 4.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 4.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 4.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 4.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 4.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 4.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 4.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 3.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 3.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 3.5
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 13.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 13.9
FF:10024-101D6 15,40,85 years, mixed 13.9

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