MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:17.8 nTPM
HPA:17.8 nTPM
GTEx:14.5 nTPM
FANTOM5:19.8 Scaled Tags Per Million
Pig:3.1 nTPM
Mouse:2.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.0
2411 Female, age 72, unknown 20.9
2828 Female, age 72, unknown 16.6
2019 Male, age 18, unknown 16.2
1833 Male, age 53, unknown 15.9
2586 Male, age 75, left hemisphere 15.5
1870 Female, age 42, unknown 15.0
1830 Male, age 51, unknown 14.3
1827 Male, age 72, unknown 13.6
2666 Male, age 74, left hemisphere 11.5
2219 Male, age 76, both hemispheres 10.4
Dorsal raphe nucleus
nTPM: 12.3
2750 Male, age 76, both hemispheres 14.8
1828 Male, age 53, unknown 13.6
2016 Female, age 72, unknown 12.1
2047 Male, age 72, unknown 11.3
2298 Female, age 72, unknown 9.7
Inferior colliculus
nTPM: 12.5
2849 Male, age 72, unknown 13.7
2097 Female, age 72, unknown 12.2
1848 Female, age 42, unknown 12.1
1890 Male, age 53, unknown 11.9
Median raphe nucleus
nTPM: 15.9
2220 Male, age 76, midline 15.9
Pedunculopontine tegmental nucleus
nTPM: 17.1
2338 Male, age 61, both hemispheres 24.1
2334 Male, age 80, both hemispheres 14.3
1921 Female, age 85, both hemispheres 12.9
Periaquaductal grey, anterior
nTPM: 11.8
2502 Female, age 75, unknown 12.3
1795 Male, age 51, unknown 12.1
1947 Male, age 18, unknown 11.0
Periaquaductal grey, dorsal
nTPM: 12.9
2464 Female, age 72, unknown 18.5
1831 Male, age 72, unknown 12.0
1840 Male, age 53, unknown 11.0
2850 Male, age 76, both hemispheres 10.1
Periaquaductal grey, lateral
nTPM: 13.1
2272 Male, age 74, both hemispheres 13.5
2053 Male, age 18, unknown 13.1
2140 Male, age 76, both hemispheres 12.8
Pretectal area
nTPM: 12.1
2407 Male, age 75, both hemispheres 17.0
1815 Male, age 53, unknown 15.3
1817 Female, age 42, unknown 12.8
2825 Male, age 18, unknown 12.8
2316 Male, age 76, right hemisphere 12.7
2007 Male, age 72, unknown 11.2
2224 Female, age 72, unknown 10.8
1816 Male, age 51, unknown 10.7
2667 Female, age 75, unknown 10.7
1944 Female, age 72, unknown 9.7
2273 Male, age 74, both hemispheres 9.6
Red nucleus
nTPM: 17.8
2227 Male, age 72, unknown 22.3
1865 Male, age 51, unknown 20.8
2588 Male, age 74, left hemisphere 20.8
2503 Female, age 72, unknown 20.1
1904 Male, age 53, unknown 18.3
2823 Male, age 76, right hemisphere 17.5
2769 Male, age 72, unknown 17.2
1821 Female, age 72, unknown 15.9
2785 Male, age 18, unknown 15.8
2584 Male, age 75, left hemisphere 15.4
2725 Female, age 75, unknown 15.3
1954 Female, age 42, unknown 14.9
Substantia nigra
nTPM: 13.3
2409 Female, age 72, unknown 23.4
2590 Female, age 75, unknown 15.6
2699 Male, age 18, unknown 15.5
2583 Male, age 75, right hemisphere 13.3
2665 Male, age 74, both hemispheres 12.0
1851 Male, age 51, unknown 11.9
1889 Female, age 72, unknown 11.9
2241 Male, age 72, unknown 10.6
1916 Female, age 42, unknown 9.8
1941 Male, age 53, unknown 9.4
Superior colliculus
nTPM: 14.2
1913 Female, age 42, unknown 19.8
1995 Male, age 72, unknown 16.4
1839 Male, age 51, unknown 15.7
1895 Male, age 76, right hemisphere 15.5
2668 Female, age 75, unknown 13.8
2664 Male, age 75, both hemispheres 13.4
2587 Male, age 74, left hemisphere 12.6
1796 Male, age 53, unknown 12.0
2087 Female, age 72, unknown 11.6
2261 Male, age 18, unknown 11.4
Ventral tegmental area
nTPM: 13.4
2021 Male, age 53, unknown 15.8
2223 Female, age 72, unknown 15.4
2410 Female, age 72, unknown 14.9
1942 Male, age 51, unknown 12.0
2218 Male, age 76, both hemispheres 11.6
1915 Female, age 42, unknown 10.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.5
Samples: 139

Max nTPM: 45.9
Min nTPM: 3.4
Std nTPM: 7.5
Median nTPM: 12.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 45.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 42.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 39.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 30.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 29.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 28.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 26.5
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 26.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 26.0
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 25.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 25.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.8
FF:10158-103A5 76 years, female 19.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.1
Pig sample Sample description nTPM
Midbrain
nTPM: 3.1
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.4
Sample A Female 3.4
Sample B Female 3.2
Sample C Male 2.4
Sample D Male 3.5
Periaqueductal gray
nTPM: 2.9
Samples: 3

Max nTPM: 3.3
Min nTPM: 2.6
Sample B Female 2.6
Sample C Male 3.3
Sample D Male 2.8
Substantia nigra
nTPM: 3.1
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.7
Sample A Female 3.5
Sample B Female 3.2
Sample C Male 3.0
Sample D Male 2.7
Superior colliculi
nTPM: 2.9
Samples: 4

Max nTPM: 3.9
Min nTPM: 2.5
Sample A Female 3.9
Sample B Female 2.5
Sample C Male 2.5
Sample D Male 2.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.6
Samples: 4

Max nTPM: 2.7
Min nTPM: 2.5
Sample A Male 2.6
Sample B Male 2.5
Sample C Female 2.5
Sample D Female 2.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71763498 Antisense, RP_050921_02_A11, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.