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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:334.9 nTPM
HPA:334.9 nTPM
FANTOM5:1198.1 Scaled Tags Per Million
Pig:714.4 nTPM
Allen mouse:12.4 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 334.9
Sample id Sample description nTPM
Area postrema
nTPM: 331.2
2799 Male, age 61, both hemispheres 348.1
2306 Male, age 80, both hemispheres 328.6
2054 Male, age 76, both hemispheres 316.9
Cuneate nuclei
nTPM: 251.3
2381 Male, age 80, both hemispheres 267.3
2376 Male, age 61, both hemispheres 244.6
2131 Male, age 76, both hemispheres 242.0
Dorsal medullary reticular nucleus
nTPM: 266.8
2040 Female, age 85, both hemispheres 303.4
2373 Male, age 61, both hemispheres 260.3
2088 Male, age 76, both hemispheres 236.6
Dorsal motor vagal complex
nTPM: 302.0
2813 Female, age 72, unknown 337.7
2000 Male, age 74, unknown 317.5
2643 Male, age 74, both hemispheres 313.4
2797 Male, age 61, both hemispheres 306.5
2185 Male, age 76, both hemispheres 302.7
2844 Male, age 55, unknown 300.7
2807 Female, age 85, both hemispheres 274.7
2133 Female, age 91, both hemispheres 263.1
Gigantocellular reticular nuclei, medullary
nTPM: 268.9
2314 Male, age 61, both hemispheres 309.5
2022 Male, age 76, right hemisphere 273.8
2462 Male, age 74, both hemispheres 273.1
1876 Female, age 85, both hemispheres 272.9
2387 Female, age 91, both hemispheres 243.5
2310 Male, age 80, both hemispheres 240.3
Gigantocellular reticular nuclei, pars
nTPM: 254.5
2336 Male, age 61, both hemispheres 275.5
2084 Female, age 85, both hemispheres 255.3
2168 Male, age 76, both hemispheres 253.2
2330 Male, age 80, both hemispheres 245.8
2706 Male, age 80, both hemispheres 242.8
Inferior olive
nTPM: 332.3
2563 Male, age 74, both hemispheres 413.7
2085 Female, age 85, both hemispheres 345.2
2628 Female, age 91, both hemispheres 326.1
2178 Male, age 61, both hemispheres 311.4
2379 Male, age 80, both hemispheres 265.2
Lateral medullary reticular nucleus
nTPM: 334.9
2305 Male, age 74, both hemispheres 388.0
2044 Male, age 76, both hemispheres 353.3
2804 Female, age 91, both hemispheres 347.3
2190 Female, age 85, both hemispheres 321.6
2374 Male, age 61, both hemispheres 301.3
2852 Male, age 80, both hemispheres 298.1
Medial vestibular nucleus
nTPM: 293.1
2801 Male, age 74, both hemispheres 337.7
2624 Male, age 61, both hemispheres 313.6
2803 Female, age 91, both hemispheres 295.0
2743 Female, age 85, both hemispheres 278.6
2093 Male, age 80, both hemispheres 267.1
2134 Male, age 76, both hemispheres 266.4
Motor hypoglossal nucleus
nTPM: 279.8
2182 Male, age 80, both hemispheres 315.4
2125 Female, age 91, both hemispheres 287.1
2461 Male, age 61, both hemispheres 274.4
2132 Female, age 85, both hemispheres 264.9
2277 Male, age 76, both hemispheres 257.5
Nucleus ambiguus
nTPM: 275.7
2071 Male, age 76, both hemispheres 327.5
2096 Female, age 85, both hemispheres 223.9
Nucleus cuneatus
nTPM: 291.2
2564 Male, age 74, both hemispheres 359.2
2808 Female, age 85, both hemispheres 319.2
2562 Male, age 61, both hemispheres 286.6
2380 Male, age 80, both hemispheres 278.4
2100 Male, age 76, both hemispheres 254.1
2805 Female, age 91, both hemispheres 249.8
Nucleus gracilis
nTPM: 325.2
2627 Male, age 74, both hemispheres 388.4
2382 Male, age 80, both hemispheres 295.5
2299 Female, age 85, both hemispheres 291.7
Nucleus raphe magnus
nTPM: 268.5
2051 Male, age 76, both hemispheres 318.4
2455 Male, age 74, both hemispheres 293.2
2160 Male, age 61, both hemispheres 270.0
2172 Female, age 85, both hemispheres 259.4
2328 Male, age 80, both hemispheres 252.8
2459 Female, age 91, both hemispheres 216.9
Nucleus raphe obscurus
nTPM: 311.2
2845 Female, age 85, midline 342.8
2142 Male, age 76, midline 305.2
2800 Male, age 61, midline 285.5
Nucleus raphe pallidus
nTPM: 309.8
1924 Male, age 61, midline 332.9
2145 Male, age 76, midline 301.7
2183 Male, age 80, midline 294.9
Nucleus tractus solitarii
nTPM: 267.2
2191 Female, age 85, both hemispheres 293.0
2144 Female, age 91, right hemisphere 281.4
2656 Male, age 76, both hemispheres 268.0
2307 Male, age 80, both hemispheres 226.5
Parvicellular reticular nuclei
nTPM: 251.4
2119 Male, age 80, both hemispheres 261.7
2095 Male, age 76, both hemispheres 261.3
2558 Male, age 74, both hemispheres 231.2
Parvicellular reticular nuclei, medullary
nTPM: 264.0
2189 Female, age 91, both hemispheres 286.1
2181 Male, age 80, left hemisphere 273.4
2091 Female, age 85, both hemispheres 232.5
Peritrigeminal nucleus
nTPM: 308.3
2067 Female, age 85, both hemispheres 328.4
2179 Male, age 61, both hemispheres 303.9
2136 Male, age 76, both hemispheres 292.5
Prepositus hypoglossal nucleus
nTPM: 293.4
2855 Female, age 85, right hemisphere 317.2
2086 Male, age 80, both hemispheres 269.6
Spinal trigeminal nucleus, caudal
nTPM: 293.4
2642 Male, age 74, both hemispheres 317.7
2312 Male, age 61, both hemispheres 315.0
2390 Female, age 91, both hemispheres 289.2
2308 Male, age 80, both hemispheres 286.5
2447 Male, age 76, both hemispheres 258.9
Spinal trigeminal nucleus, interpolar
nTPM: 277.8
2625 Male, age 61, both hemispheres 306.2
2033 Male, age 80, both hemispheres 298.5
2386 Female, age 85, both hemispheres 287.5
2389 Female, age 91, both hemispheres 272.4
2066 Male, age 76, right hemisphere 224.4
Spinal vestibular nucleus
nTPM: 278.0
2806 Female, age 85, both hemispheres 302.0
2186 Female, age 91, both hemispheres 286.6
2780 Male, age 80, both hemispheres 282.1
2748 Male, age 76, both hemispheres 279.0
2796 Male, age 61, both hemispheres 276.8
2384 Male, age 74, both hemispheres 241.3
Ventral medullary reticular nucleus
nTPM: 254.1
2372 Male, age 61, both hemispheres 261.3
2060 Male, age 76, both hemispheres 247.0
Ventrolateral medulla, A1-C1 cell groups
nTPM: 296.3
2302 Female, age 91, both hemispheres 314.1
2741 Female, age 85, both hemispheres 306.5
2180 Male, age 61, both hemispheres 300.7
1986 Male, age 76, both hemispheres 300.4
2118 Male, age 80, both hemispheres 259.6

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1198.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 1198.1
FF:10174-103C3 60 years, female 1276.8
FF:10038-101F2 18-64 years, mixed 1210.7
FF:10155-103A2 76 years, female 1106.8

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 714.4
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 714.4
Samples: 4

Max nTPM: 977.0
Min nTPM: 522.6
Sample A Female 702.3
Sample B Female 522.6
Sample C Male 655.5
Sample D Male 977.0

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 12.4
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 12.4
532581 Antisense, RP_040810_02_C03, Mouse strain C57BL/6J (56 days, male) 12.4

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